RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 DMXL1Q9Y485 3027 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 CCDC66A2RUB6 948 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 MEI4A8MW99 385 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 PLK4O00444 970 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 SLC7A4O43246 635 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 MAFKO60675 156 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 MAP3K6O95382 1288 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 DRD3P35462 400 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 MPLP40238 635 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 GARSP41250 739 aaKnown RBP13.79□□□□□ -0.2
SHMT2-228ENST00000557302 DPP6P42658 865 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 CDKN2BP42772 138 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 RENBPP51606 427 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 CCDC15Q0P6D6 951 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 TFDP2Q14188 446 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 ZNF235Q14590 738 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 GSE1Q14687 1217 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 LBRQ14739 615 aaKnown RBP13.79□□□□□ -0.2
SHMT2-228ENST00000557302 TAZQ16635 292 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 SYCP2LQ5T4T6 812 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-228ENST00000557302 PEX26Q7Z412 305 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 SLC41A1Q8IVJ1 513 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 BBS5Q8N3I7 341 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 DCLK2Q8N568 766 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 PLD5Q8N7P1 536 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 OR14C36Q8NHC7 312 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 ZNF419Q96HQ0 510 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-228ENST00000557302 EXOC2Q96KP1 924 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 OSBPL1AQ9BXW6 950 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 DTLQ9NZJ0 730 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 EVLQ9UI08 416 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-228ENST00000557302 AMFRQ9UKV5 643 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 GUCA1BQ9UMX6 200 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 PCDHA3Q9Y5H8 950 aa13.79□□□□□ -0.2
SHMT2-228ENST00000557302 NYNRINQ9P2P1 1898 aaKnown RBP13.78□□□□□ -0.2
SHMT2-228ENST00000557302 DCHS1Q96JQ0 3298 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 GON4LQ3T8J9 2241 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 BCLAF3A2AJT9 711 aaKnown RBP13.78□□□□□ -0.2
SHMT2-228ENST00000557302 FAM47DPA6NHR8 397 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 LRRC72A6NJI9 287 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 LRP3O75074 770 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 UGT2B4P06133 528 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 ITGB7P26010 798 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 GKP32189 559 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 HSPA9P38646 679 aaKnown RBP13.78□□□□□ -0.2
SHMT2-228ENST00000557302 ADPRHP54922 357 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 RWDD2BP57060 319 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 DYNLT1P63172 113 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 SLC10A7Q0GE19 358 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 TFDP3Q5H9I0 405 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 WDR45BQ5MNZ6 344 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 AGBL4Q5VU57 503 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 TIGD7Q6NT04 549 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-228ENST00000557302 ERN2Q76MJ5 926 aaKnown RBP13.78□□□□□ -0.2
SHMT2-228ENST00000557302 NT5DC3Q86UY8 548 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 UBL4BQ8N7F7 174 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 TSEN2Q8NCE0 465 aaKnown RBP13.78□□□□□ -0.2
SHMT2-228ENST00000557302 OR2T34Q8NGX1 318 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 PIGKQ92643 395 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 FAM131CQ96AQ9 280 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 ARRDC3Q96B67 414 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 PDLIM2Q96JY6 352 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 TSGA13Q96PP4 275 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 PSKH2Q96QS6 385 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 HDAC8Q9BY41 377 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 C6orf106Q9H6K1 298 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-228ENST00000557302 HEY1Q9Y5J3 304 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 CAPN6Q9Y6Q1 641 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 ZNF292O60281 2723 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 THADAQ6YHU6 1953 aa13.78□□□□□ -0.2
SHMT2-228ENST00000557302 hCG_1818297A0A087WSY0 165 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 METTL12A8MUP2 240 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 MIF4GDA9UHW6 222 aaKnown RBP13.77□□□□□ -0.21
SHMT2-228ENST00000557302 RNF103O00237 685 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 PLRG1O43660 514 aaKnown RBP13.77□□□□□ -0.21
SHMT2-228ENST00000557302 CST8O60676 142 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 FSBPO95073 299 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 FTCDO95954 541 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 PEX11BO96011 259 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 KRT10P13645 584 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 ITPKAP23677 461 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 CCNCP24863 283 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 CETN2P41208 172 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 MMP13P45452 471 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 CSNK1DP48730 415 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 NEK3P51956 506 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 COPS2P61201 443 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 NSUN2Q08J23 767 aaKnown RBP eCLIP13.77□□□□□ -0.21
SHMT2-228ENST00000557302 SPEM2Q0P670 501 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 SLC10A2Q12908 348 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-228ENST00000557302 GRM3Q14832 879 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 NUMA1Q14980 2115 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 LLGL1Q15334 1064 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 PPP2R5EQ16537 467 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 ZNF805Q5CZA5 627 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 PIP5KL1Q5T9C9 394 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 MARC1Q5VT66 337 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 DCAF12L1Q5VU92 463 aa13.77□□□□□ -0.21
SHMT2-228ENST00000557302 KAZNQ674X7 775 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms