RNA–Protein interactions for RNA: ENST00000556867.1

TDP1-216, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 748 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-216ENST00000556867 IL10RBQ08334 325 aa23.22■■□□□ 1.31
TDP1-216ENST00000556867 MMRN1Q13201 1228 aa23.22■■□□□ 1.31
TDP1-216ENST00000556867 PUM1Q14671 1186 aaKnown RBP eCLIP23.22■■□□□ 1.31
TDP1-216ENST00000556867 CYTH1Q15438 398 aa23.22■■□□□ 1.31
TDP1-216ENST00000556867 MYLK3Q32MK0 819 aa23.22■■□□□ 1.31
TDP1-216ENST00000556867 ERN2Q76MJ5 926 aaKnown RBP23.22■■□□□ 1.31
TDP1-216ENST00000556867 NETO2Q8NC67 525 aa23.22■■□□□ 1.31
TDP1-216ENST00000556867 KCTD6Q8NC69 237 aa23.22■■□□□ 1.31
TDP1-216ENST00000556867 OR6K2Q8NGY2 324 aa23.22■■□□□ 1.31
TDP1-216ENST00000556867 VOPP1Q96AW1 172 aa23.22■■□□□ 1.31
TDP1-216ENST00000556867 RTKNQ9BST9 563 aa23.22■■□□□ 1.31
TDP1-216ENST00000556867 SP110Q9HB58 689 aa23.22■■□□□ 1.31
TDP1-216ENST00000556867 PREBQ9HCU5 417 aa23.22■■□□□ 1.31
TDP1-216ENST00000556867 IPO11Q9UI26 975 aaKnown RBP23.22■■□□□ 1.31
TDP1-216ENST00000556867 EPN1Q9Y6I3 576 aaPredicted RBP23.22■■□□□ 1.31
TDP1-216ENST00000556867 SLCO1B1Q9Y6L6 691 aa23.22■■□□□ 1.31
TDP1-216ENST00000556867 PLXNA2O75051 1894 aa23.22■■□□□ 1.31
TDP1-216ENST00000556867 A0A1W2PPC4 97 aa23.21■■□□□ 1.31
TDP1-216ENST00000556867 KRIT1O00522 736 aa23.21■■□□□ 1.31
TDP1-216ENST00000556867 LATO43561 262 aa23.21■■□□□ 1.31
TDP1-216ENST00000556867 SLC1A1P43005 524 aa23.21■■□□□ 1.31
TDP1-216ENST00000556867 ARHGAP36Q6ZRI8 547 aa23.21■■□□□ 1.31
TDP1-216ENST00000556867 MAP7D3Q8IWC1 876 aa23.21■■□□□ 1.31
TDP1-216ENST00000556867 TP53INP2Q8IXH6 220 aa23.21■■□□□ 1.31
TDP1-216ENST00000556867 FAF2Q96CS3 445 aa23.21■■□□□ 1.31
TDP1-216ENST00000556867 CALN1Q9BXU9 219 aa23.21■■□□□ 1.31
TDP1-216ENST00000556867 OSBPL1AQ9BXW6 950 aa23.21■■□□□ 1.31
TDP1-216ENST00000556867 TMEM9BQ9NQ34 198 aa23.21■■□□□ 1.31
TDP1-216ENST00000556867 KLHL11Q9NVR0 708 aa23.21■■□□□ 1.31
TDP1-216ENST00000556867 KNL1Q8NG31 2342 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 TBC1D3DA0A087WVF3 549 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 TBC1D3IA0A087WXS9 549 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 TBC1D3EA0A087X179 549 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 TBC1D3KA0A087X1G2 549 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 A0A0A6YYK5 440 aaPredicted RBP23.2■■□□□ 1.3
TDP1-216ENST00000556867 TBC1D3FA6NER0 549 aaPredicted RBP23.2■■□□□ 1.3
TDP1-216ENST00000556867 TBC1D3LB9A6J9 549 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 ARHGAP33O14559 1287 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 CDX4O14627 284 aaPredicted RBP23.2■■□□□ 1.3
TDP1-216ENST00000556867 TBC1D3HP0C7X1 549 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 GKP32189 559 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 NEK3P51956 506 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 PPP2CBP62714 309 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 PPP2CAP67775 309 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 RFTN1Q14699 578 aaPredicted RBP23.2■■□□□ 1.3
TDP1-216ENST00000556867 LRRC38Q5VT99 294 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 TBC1D3GQ6DHY5 549 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 TBC1D3CQ6IPX1 549 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 TRIM69Q86WT6 500 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 TBC1D3Q8IZP1 549 aaPredicted RBP23.2■■□□□ 1.3
TDP1-216ENST00000556867 TM9SF3Q9HD45 589 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 FSCN3Q9NQT6 498 aa23.2■■□□□ 1.3
TDP1-216ENST00000556867 ASCC3Q8N3C0 2202 aaKnown RBP23.19■■□□□ 1.3
TDP1-216ENST00000556867 IPO7O95373 1038 aaKnown RBP23.19■■□□□ 1.3
TDP1-216ENST00000556867 SYPP08247 313 aa23.19■■□□□ 1.3
TDP1-216ENST00000556867 AFF3P51826 1226 aaKnown RBP23.19■■□□□ 1.3
TDP1-216ENST00000556867 RAD51Q06609 339 aa23.19■■□□□ 1.3
TDP1-216ENST00000556867 ANKRD20A8PQ5CZ79 823 aa23.19■■□□□ 1.3
TDP1-216ENST00000556867 ZNF805Q5CZA5 627 aa23.19■■□□□ 1.3
TDP1-216ENST00000556867 NEK5Q6P3R8 708 aa23.19■■□□□ 1.3
TDP1-216ENST00000556867 RAD9BQ6WBX8 426 aa23.19■■□□□ 1.3
TDP1-216ENST00000556867 PARS2Q7L3T8 475 aaKnown RBP23.19■■□□□ 1.3
TDP1-216ENST00000556867 SPC24Q8NBT2 197 aa23.19■■□□□ 1.3
TDP1-216ENST00000556867 PCDH19Q8TAB3 1148 aa23.19■■□□□ 1.3
TDP1-216ENST00000556867 ZNF599Q96NL3 588 aa23.19■■□□□ 1.3
TDP1-216ENST00000556867 BAG1Q99933 345 aaPredicted RBP23.19■■□□□ 1.3
TDP1-216ENST00000556867 ZDHHC5Q9C0B5 715 aa23.19■■□□□ 1.3
TDP1-216ENST00000556867 EBF2Q9HAK2 575 aa23.19■■□□□ 1.3
TDP1-216ENST00000556867 DOCK9Q9BZ29 2069 aa23.19■■□□□ 1.3
TDP1-216ENST00000556867 SHROOM3Q8TF72 1996 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 CNOT1A5YKK6 2376 aaKnown RBP23.18■■□□□ 1.3
TDP1-216ENST00000556867 C4orf47A7E2U8 309 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 ZNF487B1APH4 448 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 PALMO75781 387 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 UGT2B4P06133 528 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 ADRB3P13945 408 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 KDELR1P24390 212 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 NUDT1P36639 197 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 NOP2P46087 812 aaKnown RBP23.18■■□□□ 1.3
TDP1-216ENST00000556867 GRIA4P48058 902 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 GRIK2Q13002 908 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 PAFAH1B3Q15102 231 aaKnown RBP23.18■■□□□ 1.3
TDP1-216ENST00000556867 TMCO4Q5TGY1 634 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 NCBP2-AS2Q69YL0 99 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 VSIG1Q86XK7 387 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 TMEM139Q8IV31 216 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 RAPGEF5Q92565 580 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 EXOC2Q96KP1 924 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 CPEB1Q9BZB8 566 aaKnown RBP23.18■■□□□ 1.3
TDP1-216ENST00000556867 TFR2Q9UP52 801 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 CACNA1AO00555 2505 aa23.18■■□□□ 1.3
TDP1-216ENST00000556867 MFSD11O43934 449 aa23.17■■□□□ 1.3
TDP1-216ENST00000556867 BUB1BO60566 1050 aaPredicted RBP23.17■■□□□ 1.3
TDP1-216ENST00000556867 MAFKO60675 156 aa23.17■■□□□ 1.3
TDP1-216ENST00000556867 COMTP21964 271 aa23.17■■□□□ 1.3
TDP1-216ENST00000556867 MAPK8P45983 427 aa23.17■■□□□ 1.3
TDP1-216ENST00000556867 CSNK1DP48730 415 aa23.17■■□□□ 1.3
TDP1-216ENST00000556867 RACK1P63244 317 aaKnown RBP23.17■■□□□ 1.3
TDP1-216ENST00000556867 ZFYVE27Q5T4F4 411 aa23.17■■□□□ 1.3
TDP1-216ENST00000556867 FBXL19Q6PCT2 694 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms