RNA–Protein interactions for RNA: ENST00000555890.5

SLIRP-204, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 471 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-204ENST00000555890 DUSP12Q9UNI6 340 aa7□□□□□ -1.29
SLIRP-204ENST00000555890 NAALADL1Q9UQQ1 740 aa7□□□□□ -1.29
SLIRP-204ENST00000555890 PCDHB5Q9Y5E4 795 aa7□□□□□ -1.29
SLIRP-204ENST00000555890 HEY1Q9Y5J3 304 aa7□□□□□ -1.29
SLIRP-204ENST00000555890 MYO16Q9Y6X6 1858 aa7□□□□□ -1.29
SLIRP-204ENST00000555890 SF3B1O75533 1304 aaKnown RBP eCLIP7□□□□□ -1.29
SLIRP-204ENST00000555890 CENPEQ02224 2701 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 VWA8A3KMH1 1905 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 ZNF638Q14966 1978 aaKnown RBP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 KRBA1A5PL33 1030 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 TBKBP1A7MCY6 615 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 HACD1B0YJ81 288 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 TTC4O95801 387 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 BPNT1O95861 308 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 ZSCAN5DPP0CG00 497 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 PECAM1P16284 738 aaPredicted RBP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 FGFR3P22607 806 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 IL4RP24394 825 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 RPL22P35268 128 aaKnown RBP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 MAGEA11P43364 429 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 HCAR3P49019 387 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 SLC11A1P49279 550 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 CACNA2D1P54289 1103 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 YWHAGP61981 247 aaKnown RBP eCLIP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 ZNF844Q08AG5 666 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 SLC29A2Q14542 456 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 LRRC14Q15048 493 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 CA9Q16790 459 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 KRT71Q3SY84 523 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 GLIPR1L2Q4G1C9 344 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 RNASEH2BQ5TBB1 312 aaKnown RBP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 SYPL2Q5VXT5 272 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 NPNTQ6UXI9 565 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 PPP1R21Q6ZMI0 780 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 CENPUQ71F23 418 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 BNIPLQ7Z465 357 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 REC114Q7Z4M0 266 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 ZC3H18Q86VM9 953 aaKnown RBP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 FAM131BQ86XD5 332 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 UNC45BQ8IWX7 931 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 LRRC43Q8N309 656 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 FAM71DQ8N9W8 422 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 RNF139Q8WU17 664 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 C2orf15Q8WU43 125 aaKnown RBP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 ARL8AQ96BM9 186 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 PLD4Q96BZ4 506 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 ZBTB9Q96C00 473 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 C8orf48Q96LL4 319 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 TTC25Q96NG3 672 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 NSUN5Q96P11 429 aaKnown RBP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 CSPG4P5Q96PW8 444 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 PSMG3-AS1Q96PY0 264 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 HHIPQ96QV1 700 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 TMEM209Q96SK2 561 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 RBM15Q96T37 977 aaKnown RBP eCLIP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 TMEM109Q9BVC6 243 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 FRMD8Q9BZ67 464 aaPredicted RBP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 ROPN1BQ9BZX4 212 aaPredicted RBP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 CDC42EP4Q9H3Q1 356 aaKnown RBP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 FBXO44Q9H4M3 255 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 PRORYQ9H606 182 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 WDCPQ9H6R7 721 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 ROPN1Q9HAT0 212 aaPredicted RBP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 ABCC13Q9NSE7 274 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 PIGVQ9NUD9 493 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 DDIT4Q9NX09 232 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 PSD3Q9NYI0 1048 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 CWC15Q9P013 229 aaKnown RBP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 MARK1Q9P0L2 795 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 PAK5Q9P286 719 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 BCCIPQ9P287 314 aaKnown RBP eCLIP6.99□□□□□ -1.29
SLIRP-204ENST00000555890 FBXW11Q9UKB1 542 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 SHOC2Q9UQ13 582 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 NFS1Q9Y697 457 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 COL6A6A6NMZ7 2263 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 SHROOM3Q8TF72 1996 aa6.99□□□□□ -1.29
SLIRP-204ENST00000555890 NIPBLQ6KC79 2804 aaeCLIP6.98□□□□□ -1.29
SLIRP-204ENST00000555890 F8W810 466 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 EEF2KO00418 725 aaKnown RBP6.98□□□□□ -1.29
SLIRP-204ENST00000555890 EIF3HO15372 352 aaKnown RBP eCLIP6.98□□□□□ -1.29
SLIRP-204ENST00000555890 KCNN4O15554 427 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 RIPK2O43353 540 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 B4GALT3O60512 393 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 RTN3O95197 1032 aaPredicted RBP6.98□□□□□ -1.29
SLIRP-204ENST00000555890 FYNP06241 537 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 IVLP07476 585 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 GALTP07902 379 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 C6P13671 934 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 ETS1P14921 441 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 CPB1P15086 417 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 GLULP15104 373 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 GOT1P17174 413 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 CSRP1P21291 193 aaKnown RBP6.98□□□□□ -1.29
SLIRP-204ENST00000555890 NME2P22392 152 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 AMPD1P23109 780 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 ATP5DP30049 168 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 CHKAP35790 457 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 MAGEA4P43358 317 aa6.98□□□□□ -1.29
SLIRP-204ENST00000555890 ALDH7A1P49419 539 aaKnown RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms