RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 UNQ6494/PRO21346Q6UXR6 183 aa12.04□□□□□ -0.48
VRK1-204ENST00000555351 VPS36Q86VN1 386 aa12.04□□□□□ -0.48
VRK1-204ENST00000555351 PYROXD2Q8N2H3 581 aa12.04□□□□□ -0.48
VRK1-204ENST00000555351 GRIN3AQ8TCU5 1115 aa12.04□□□□□ -0.48
VRK1-204ENST00000555351 HCAR2Q8TDS4 363 aa12.04□□□□□ -0.48
VRK1-204ENST00000555351 SAP25Q8TEE9 199 aa12.04□□□□□ -0.48
VRK1-204ENST00000555351 GATA6Q92908 595 aa12.04□□□□□ -0.48
VRK1-204ENST00000555351 IFT43Q96FT9 208 aa12.04□□□□□ -0.48
VRK1-204ENST00000555351 FEM1CQ96JP0 617 aa12.04□□□□□ -0.48
VRK1-204ENST00000555351 GDAP1L1Q96MZ0 367 aa12.04□□□□□ -0.48
VRK1-204ENST00000555351 MAGEB5Q9BZ81 275 aa12.04□□□□□ -0.48
VRK1-204ENST00000555351 CNOT8Q9UFF9 292 aaKnown RBP12.04□□□□□ -0.48
VRK1-204ENST00000555351 AP4E1Q9UPM8 1137 aa12.04□□□□□ -0.48
VRK1-204ENST00000555351 FCF1Q9Y324 198 aaKnown RBP12.04□□□□□ -0.48
VRK1-204ENST00000555351 HS3ST3A1Q9Y663 406 aa12.04□□□□□ -0.48
VRK1-204ENST00000555351 RASA4BC9J798 803 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 RASA4O43374 803 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 HYAL3O43820 417 aaPredicted RBP12.03□□□□□ -0.48
VRK1-204ENST00000555351 CREB3O43889 395 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 PRPSAP2O60256 369 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 SERPING1P05155 500 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 C1SP09871 688 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 EPHA8P29322 1005 aaPredicted RBP12.03□□□□□ -0.48
VRK1-204ENST00000555351 MAT2AP31153 395 aaKnown RBP12.03□□□□□ -0.48
VRK1-204ENST00000555351 PCK1P35558 622 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 DNA2P51530 1060 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 TPI1P60174 286 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 SHBQ15464 509 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 MYLK3Q32MK0 819 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 POM121L1PQ3SYA9 428 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 ABI3BPQ7Z7G0 1075 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 LUZP1Q86V48 1076 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 KLHDC7BQ96G42 594 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 LENG8Q96PV6 779 aaPredicted RBP12.03□□□□□ -0.48
VRK1-204ENST00000555351 CPEB1Q9BZB8 566 aaKnown RBP12.03□□□□□ -0.48
VRK1-204ENST00000555351 ZDHHC6Q9H6R6 413 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 LRRC19Q9H756 370 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 TOR4AQ9NXH8 423 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 DKK3Q9UBP4 350 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 CAPN11Q9UMQ6 739 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 BTBD3Q9Y2F9 522 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 PCDHGA1Q9Y5H4 931 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 FADS3Q9Y5Q0 445 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 EPG5Q9HCE0 2579 aa12.03□□□□□ -0.48
VRK1-204ENST00000555351 C16orf96A6NNT2 1141 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 TMCO5BA8MYB1 307 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 EEF2KO00418 725 aaKnown RBP12.02□□□□□ -0.49
VRK1-204ENST00000555351 KCNK3O14649 394 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 BUB1O43683 1085 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 TMCC1O94876 653 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 PCDH8O95206 1070 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 IGSF6O95976 241 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 TPM3P06753 285 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 ITGAVP06756 1048 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 PARS2Q7L3T8 475 aaKnown RBP12.02□□□□□ -0.49
VRK1-204ENST00000555351 KANSL1Q7Z3B3 1105 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 SLCO6A1Q86UG4 719 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 SPATS2Q86XZ4 545 aaKnown RBP12.02□□□□□ -0.49
VRK1-204ENST00000555351 CHCHD4Q8N4Q1 142 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 LZTR1Q8N653 840 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 ARFGAP1Q8N6T3 406 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 NIPA2Q8N8Q9 360 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 DENND6BQ8NEG7 585 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 VOPP1Q96AW1 172 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 ZNF653Q96CK0 615 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 C1QTNF2Q9BXJ5 285 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 SLC17A9Q9BYT1 436 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 TM6SF2Q9BZW4 377 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 GPR27Q9NS67 375 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 KLHL11Q9NVR0 708 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 FTSJ1Q9UET6 329 aa12.02□□□□□ -0.49
VRK1-204ENST00000555351 ZFR2Q9UPR6 939 aaKnown RBP12.02□□□□□ -0.49
VRK1-204ENST00000555351 LUC7L2Q9Y383 392 aaKnown RBP12.02□□□□□ -0.49
VRK1-204ENST00000555351 TPRP12270 2363 aaKnown RBP12.02□□□□□ -0.49
VRK1-204ENST00000555351 ARHGAP42A6NI28 874 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 A6NNZ2 444 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 RNF103O00237 685 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 KRIT1O00522 736 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 RIOK3O14730 519 aaKnown RBP12.01□□□□□ -0.49
VRK1-204ENST00000555351 AREL1O15033 823 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 SLC31A1O15431 190 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 PRAMEF11O60813 436 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 LRCH4O75427 683 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 TOP3BO95985 862 aaKnown RBP12.01□□□□□ -0.49
VRK1-204ENST00000555351 ATXN1LP0C7T5 689 aaKnown RBP12.01□□□□□ -0.49
VRK1-204ENST00000555351 MIPP30301 263 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 HNRNPH3P31942 346 aaKnown RBP12.01□□□□□ -0.49
VRK1-204ENST00000555351 CSNK1DP48730 415 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 RHOAP61586 193 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 PIGHQ14442 188 aaPredicted RBP12.01□□□□□ -0.49
VRK1-204ENST00000555351 RFTN1Q14699 578 aaPredicted RBP12.01□□□□□ -0.49
VRK1-204ENST00000555351 ZSCAN23Q3MJ62 389 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 BOLA3Q53S33 107 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 TDRD12Q587J7 1177 aaKnown RBP12.01□□□□□ -0.49
VRK1-204ENST00000555351 TMCO4Q5TGY1 634 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 AFMIDQ63HM1 303 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 GDPD4Q6W3E5 623 aa12.01□□□□□ -0.49
VRK1-204ENST00000555351 KYAT3Q6YP21 454 aaKnown RBP12.01□□□□□ -0.49
VRK1-204ENST00000555351 CCNI2Q6ZMN8 369 aaPredicted RBP12.01□□□□□ -0.49
VRK1-204ENST00000555351 RFX8Q6ZV50 586 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms