RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 NPWQ8N729 165 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 EFCAB3Q8N7B9 438 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 SLC7A14Q8TBB6 771 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 PPP4R1Q8TF05 950 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 PCED1BQ96HM7 432 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 KIAA1522Q9P206 1035 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-207ENST00000553837 EMCNQ9ULC0 261 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 EEF2KO00418 725 aaKnown RBP12.42□□□□□ -0.42
SHMT2-207ENST00000553837 IGHA2P01877 340 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 USP17L7P0C7H9 530 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 ADRA1BP35368 520 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 ALDH3B2P48448 385 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 DAOAP59103 153 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 NAA20P61599 178 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 RELAQ04206 551 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 SEMA3BQ13214 749 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 FSCN1Q16658 493 aaKnown RBP12.42□□□□□ -0.42
SHMT2-207ENST00000553837 FASTKD1Q53R41 847 aaKnown RBP12.42□□□□□ -0.42
SHMT2-207ENST00000553837 TEDDM1Q5T9Z0 273 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 CST9Q5W186 159 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 ZNF280DQ6N043 979 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 PAOXQ6QHF9 649 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 ATG14Q6ZNE5 492 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 FRMD7Q6ZUT3 714 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 FCRL3Q96P31 734 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-207ENST00000553837 SLC2A11Q9BYW1 496 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 SHCBP1LQ9BZQ2 653 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 CNOT11Q9UKZ1 510 aaKnown RBP12.42□□□□□ -0.42
SHMT2-207ENST00000553837 PRPF19Q9UMS4 504 aaKnown RBP12.42□□□□□ -0.42
SHMT2-207ENST00000553837 CDY2AQ9Y6F7 541 aa12.42□□□□□ -0.42
SHMT2-207ENST00000553837 HHLA1C9JL84 531 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 USP12O75317 370 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 SERPINB7O75635 380 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 PRKCGP05129 697 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 MLNP12872 115 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 PSMC3P17980 439 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 ERCC2P18074 760 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 FKBP1BP68106 108 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 NEPROQ6NW34 567 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 TIFABQ6ZNK6 161 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 CYS1Q717R9 158 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 SAPCD2Q86UD0 394 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 FAM35AQ86V20 835 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 C2orf69Q8N8R5 385 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 TRPV1Q8NER1 839 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 SREK1Q8WXA9 508 aaKnown RBP12.41□□□□□ -0.42
SHMT2-207ENST00000553837 ZNF778Q96MU6 729 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 AP5M1Q9H0R1 490 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 XPNPEP3Q9NQH7 507 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 TBC1D23Q9NUY8 699 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 RIMS3Q9UJD0 308 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 ST3GAL5Q9UNP4 418 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 FAM32AQ9Y421 112 aaKnown RBP12.41□□□□□ -0.42
SHMT2-207ENST00000553837 TRPM7Q96QT4 1865 aa12.41□□□□□ -0.42
SHMT2-207ENST00000553837 MYOCOSA0A1B0GUC4 107 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 EIF3FO00303 357 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-207ENST00000553837 CAPNS1P04632 268 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 CTSHP09668 335 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 ERVK-10P10266 1014 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 PTPN3P26045 913 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 STT3AP46977 705 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 ENTPD1P49961 510 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 PDE1CQ14123 709 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-207ENST00000553837 PDK1Q15118 436 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 MBLAC2Q68D91 279 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 PEX5LQ8IYB4 626 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 EDEM1Q92611 657 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 PGBD4Q96DM1 585 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 RTP3Q9BQQ7 232 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 EIF2B3Q9NR50 452 aaKnown RBP12.4□□□□□ -0.42
SHMT2-207ENST00000553837 IGSF9Q9P2J2 1179 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 STAP1Q9ULZ2 295 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 BRCA2P51587 3418 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 H0YJX3 145 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 TPP1O14773 563 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 LYPLA1O75608 230 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-207ENST00000553837 ZNF12P17014 697 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 GRK2P25098 689 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 CTGFP29279 349 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 PPARGP37231 505 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-207ENST00000553837 SERPINB9P50453 376 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 CCT8P50990 548 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 TUBA4AP68366 448 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 MRPS6P82932 125 aaKnown RBP12.4□□□□□ -0.42
SHMT2-207ENST00000553837 CDKL1Q00532 357 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 FLOT2Q14254 428 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 PPM1JQ5JR12 505 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 RAB41Q5JT25 222 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 SLC2A7Q6PXP3 512 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 C16orf89Q6UX73 402 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 PID1Q7Z2X4 250 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 GALNT4Q8N4A0 578 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 OR52K1Q8NGK4 314 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 CASP10Q92851 521 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 COPS7BQ9H9Q2 264 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-207ENST00000553837 FAM105AQ9NUU6 356 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 SCHIP1Q9P0W5 487 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-207ENST00000553837 FBXW11Q9UKB1 542 aa12.4□□□□□ -0.42
SHMT2-207ENST00000553837 E2F8A0AVK6 867 aa12.39□□□□□ -0.43
SHMT2-207ENST00000553837 CASTOR2A6NHX0 329 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms