RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SIRPGQ9P1W8 387 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 CHD5Q8TDI0 1954 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 A0A1B0GVM2 712 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 HEATR9A2RTY3 570 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 TCAF2A6NFQ2 919 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 KDELR3O43731 214 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 SIN3BO75182 1162 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 FSBPO95073 299 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 MPOP05164 745 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 MBL2P11226 248 aaPredicted RBP26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 CHRNA4P43681 627 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 SERPINH1P50454 418 aaKnown RBP26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 ZNF177Q13360 481 aaPredicted RBP26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 ALG1LQ6GMV1 187 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 FSTL4Q6MZW2 842 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 ZNF334Q9HCZ1 680 aaPredicted RBP26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 SNX15Q9NRS6 342 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 PTPRSQ13332 1948 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 LOC285095A0A1B0GVY8 99 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 GSTA1P08263 222 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 TROVE2P10155 538 aaKnown RBP eCLIP26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 IRF1P10914 325 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 ETFBP38117 255 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 ARCN1P48444 511 aaKnown RBP26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 RFTN1Q14699 578 aaPredicted RBP26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 SLC14A2Q15849 920 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 UGP2Q16851 508 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 HABP4Q5JVS0 413 aaKnown RBP26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 ATG16L1Q676U5 607 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 ESRP1Q6NXG1 681 aaKnown RBP26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 SLC25A41Q8N5S1 370 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 GBP7Q8N8V2 638 aaPredicted RBP26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 OR7D4Q8NG98 312 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 ZFRQ96KR1 1074 aaKnown RBP26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 ATXN3LQ9H3M9 355 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 IL21Q9HBE4 155 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 ABCF3Q9NUQ8 709 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 COLQQ9Y215 455 aaPredicted RBP26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 USH1CQ9Y6N9 552 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 ANAPC1Q9H1A4 1944 aa26.65■■□□□ 1.86
CCDC88C-205ENST00000553403 A0A0D9SEW6 157 aa26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 PAPSS2O95340 614 aaPredicted RBP26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 TGDSO95455 350 aa26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 BPGMP07738 259 aa26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 RHOCP08134 193 aa26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 LINC00271P0C7V0 271 aa26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 PPIGQ13427 754 aaKnown RBP eCLIP26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 IL31Q6EBC2 164 aa26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 KDELC2Q7Z4H8 507 aa26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 C7orf61Q8IZ16 206 aa26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 RHOJQ9H4E5 214 aa26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 SEPT3Q9UH03 358 aa26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 TBC1D30Q9Y2I9 924 aa26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 MTO1Q9Y2Z2 717 aaKnown RBP26.64■■□□□ 1.86
CCDC88C-205ENST00000553403 ZBBXA8MT70 800 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 OLFM2O95897 454 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 FGBP02675 491 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 CNPP09543 421 aaKnown RBP26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 MAGEA9P43362 315 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 POLD2P49005 469 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 OXCT1P55809 520 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 ACTN3Q08043 901 aaPredicted RBP26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 CCDC15Q0P6D6 951 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 MSLNQ13421 630 aaPredicted RBP26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 IHHQ14623 411 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 N4BP2L1Q5TBK1 243 aaPredicted RBP26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 CHRDL2Q6WN34 429 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 C16orf59Q7L2K0 433 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 NUDCD3Q8IVD9 361 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 C10orf82Q8WW14 230 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 CLP1Q92989 425 aaKnown RBP26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 WBP2Q969T9 261 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 VPS39Q96JC1 886 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 GPR22Q99680 433 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 SEMA3CQ99985 751 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 EMCNQ9ULC0 261 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 PLIN3O60664 434 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 VAPBO95292 243 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 EPOP01588 193 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 ARNTP27540 789 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 SEPT6Q14141 434 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 ZNF783Q6ZMS7 281 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 OR52K2Q8NGK3 314 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 E2F7Q96AV8 911 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 FEM1CQ96JP0 617 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 MGME1Q9BQP7 344 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 FAM167BQ9BTA0 163 aa26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 ACE2Q9BYF1 805 aaPredicted RBP26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 UBA2Q9UBT2 640 aaPredicted RBP26.63■■□□□ 1.85
CCDC88C-205ENST00000553403 CCDC78A2IDD5 438 aa26.62■■□□□ 1.85
CCDC88C-205ENST00000553403 TGM5O43548 720 aa26.62■■□□□ 1.85
CCDC88C-205ENST00000553403 SGSHP51688 502 aa26.62■■□□□ 1.85
CCDC88C-205ENST00000553403 SMAD3P84022 425 aaKnown RBP26.62■■□□□ 1.85
CCDC88C-205ENST00000553403 TSTD2Q5T7W7 516 aa26.62■■□□□ 1.85
CCDC88C-205ENST00000553403 ZC3HC1Q86WB0 502 aaKnown RBP26.62■■□□□ 1.85
CCDC88C-205ENST00000553403 RMDN2Q96LZ7 410 aa26.62■■□□□ 1.85
CCDC88C-205ENST00000553403 SPON2Q9BUD6 331 aa26.62■■□□□ 1.85
CCDC88C-205ENST00000553403 TRPC7Q9HCX4 862 aa26.62■■□□□ 1.85
CCDC88C-205ENST00000553403 SLC2A6Q9UGQ3 507 aa26.62■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms