RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 KIF12Q96FN5 646 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 P2RY11Q96G91 374 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TMEM176AQ96HP8 235 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CSF3RQ99062 836 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 GMLQ99445 158 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 RBBP8Q99708 897 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 C1QTNF1Q9BXJ1 281 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 MAF1Q9H063 256 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 BRD8Q9H0E9 1235 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 IL1RL2Q9HB29 575 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 GBA2Q9HCG7 927 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 FBRSL1Q9HCM7 1045 aaKnown RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TRPC7Q9HCX4 862 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CHRAC1Q9NRG0 131 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 PNPLA3Q9NST1 481 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 UBP1Q9NZI7 540 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 GIMAP2Q9UG22 337 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 EGFL7Q9UHF1 273 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF214Q9UL59 606 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 SLC39A10Q9ULF5 831 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 SLC27A5Q9Y2P5 690 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 SCN1AP35498 2009 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 A0A087WZ62 844 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 SDHDO14521 159 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 DLX3O60479 287 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 BMP10O95393 424 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 C8BP07358 591 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 LCP1P13796 627 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 PGAM1P18669 254 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CHRM3P20309 590 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CNTFP26441 200 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 YWHAQP27348 245 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 EFNA5P52803 228 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 NME5P56597 212 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 C21orf59P57076 290 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 GRM1Q13255 1194 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 LRP8Q14114 963 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 PDK2Q15119 407 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 SURF1Q15526 300 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 INSCQ1MX18 579 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 SOWAHAQ2M3V2 549 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 ZBED5Q49AG3 693 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 FKBP1CQ5VVH2 108 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 EGFLAMQ63HQ2 1017 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 DNAJC14Q6Y2X3 702 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CYHR1Q6ZMK1 362 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 ACOT1Q86TX2 421 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 FAM35AQ86V20 835 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 TMEM126BQ8IUX1 230 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CEP97Q8IW35 865 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CENPLQ8N0S6 344 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF567Q8N184 647 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CCNYL1Q8N7R7 359 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CATSPER1Q8NEC5 780 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 SLC7A14Q8TBB6 771 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 DQX1Q8TE96 717 aaKnown RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 ACDQ96AP0 544 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 THAP11Q96EK4 314 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 MAML3Q96JK9 1138 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 QKIQ96PU8 341 aaKnown RBP eCLIP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 FDXACB1Q9BRP7 624 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 HAUS8Q9BT25 410 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 FRMD8Q9BZ67 464 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 DRC3Q9H069 523 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 HIPK3Q9H422 1215 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 TASP1Q9H6P5 420 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 POLR1BQ9H9Y6 1135 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 EFCAB1Q9HAE3 211 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 PCDH12Q9NPG4 1184 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CACNA2D2Q9NY47 1150 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 VPS51Q9UID3 782 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 SYNPO2Q9UMS6 1093 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 AP4E1Q9UPM8 1137 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 WDR37Q9Y2I8 494 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 MAFBQ9Y5Q3 323 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 COL11A2P13942 1736 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 FER1L6Q2WGJ9 1857 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 SIP14410 1827 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 ZFC3H1O60293 1989 aaKnown RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 A0A0A0MRY4 1105 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 TCRBV3S1A0A5B6 114 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 LACTBL1A8MY62 500 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 C19orf81C9J6K1 198 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 TRIM38O00635 465 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 GIPC1O14908 333 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 SULT1C4O75897 302 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 SDC4P31431 198 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 HSPA13P48723 471 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 LIMK2P53671 638 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 NUP107P57740 925 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 TRAF2Q12933 501 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 ITGADQ13349 1161 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF829Q3KNS6 432 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 PYCR3Q53H96 274 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 JADE1Q6IE81 842 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 TMEM214Q6NUQ4 689 aaKnown RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 TTC33Q6PID6 262 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 CYS1Q717R9 158 aa4.91□□□□□ -1.62
LIMA1-214ENST00000552783 PIWIL3Q7Z3Z3 882 aaKnown RBP4.91□□□□□ -1.62
LIMA1-214ENST00000552783 FAM131BQ86XD5 332 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms