RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 BNIPLQ7Z465 357 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 PIGZQ86VD9 579 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 ZC3HC1Q86WB0 502 aaKnown RBP5.5□□□□□ -1.53
LIMA1-212ENST00000552491 SLC41A1Q8IVJ1 513 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 DENND6AQ8IWF6 608 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 PNPLA1Q8N8W4 532 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 PPP1R13LQ8WUF5 828 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 STYXQ8WUJ0 223 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 DLG3Q92796 817 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 FAM210AQ96ND0 272 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 GPR22Q99680 433 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 APBA2Q99767 749 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 FTHL17Q9BXU8 183 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 EIF2AQ9BY44 585 aaKnown RBP5.5□□□□□ -1.53
LIMA1-212ENST00000552491 OSBPL2Q9H1P3 480 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 SETD4Q9NVD3 440 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 BFARQ9NZS9 450 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 EPS15L1Q9UBC2 864 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 PPP1R1BQ9UD71 204 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-212ENST00000552491 CIDEBQ9UHD4 219 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 CNOT11Q9UKZ1 510 aaKnown RBP5.5□□□□□ -1.53
LIMA1-212ENST00000552491 RUVBL2Q9Y230 463 aaKnown RBP5.5□□□□□ -1.53
LIMA1-212ENST00000552491 CDYLQ9Y232 598 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 TLL2Q9Y6L7 1015 aa5.5□□□□□ -1.53
LIMA1-212ENST00000552491 SCN4AP35499 1836 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 PRORSD1PA6NEY8 169 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 TMX2-CTNND1H3BSU7 103 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 M0QYT0 321 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 FBP2O00757 339 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 TADA2AO75478 443 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 FYNP06241 537 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF286BP0CG31 522 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 HNRNPLP14866 589 aaKnown RBP eCLIP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 NFKB1P19838 968 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 HOXA11P31270 313 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 SCNN1AP37088 669 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 NDST2P52849 883 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 BCAT1P54687 386 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 NR1H2P55055 460 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CDH15P55291 814 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 GJA9P57773 515 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 PSME3P61289 254 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 MPP1Q00013 466 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CTBSQ01459 385 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 POU5F1BQ06416 359 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 PRKAA1Q13131 559 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 VGLL4Q14135 290 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 IKBKEQ14164 716 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 FRG1Q14331 258 aaKnown RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 RFTN1Q14699 578 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 MFSD10Q14728 455 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 ADRM1Q16186 407 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 KYAT1Q16773 422 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 PPP1R3AQ16821 1122 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 MTX3Q5HYI7 312 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 KLC3Q6P597 504 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 MAMDC4Q6UXC1 1216 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CARM1Q86X55 608 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 HOMEZQ8IX15 550 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CPNE9Q8IYJ1 553 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 MYO1HQ8N1T3 1032 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 TXNDC5Q8NBS9 432 aaKnown RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 NLRP7Q8WX94 980 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 STON2Q8WXE9 905 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 LZICQ8WZA0 190 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 ITFG2Q969R8 447 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 NT5C3BQ969T7 300 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 NXNL1Q96CM4 212 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 SGF29Q96ES7 293 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF419Q96HQ0 510 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 SCYL1Q96KG9 808 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF597Q96LX8 424 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 NPY6RQ99463 290 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 IL22Q9GZX6 179 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 EFCAB1Q9HAE3 211 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 TIMMDC1Q9NPL8 285 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 OLAHQ9NV23 265 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 ADA2Q9NZK5 511 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 RCOR3Q9P2K3 495 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 THEGQ9P2T0 379 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 XPR1Q9UBH6 696 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 MID2Q9UJV3 735 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 PADI4Q9UM07 663 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 EEF2KO00418 725 aaKnown RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 TRIM38O00635 465 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 NRP1O14786 923 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 XPO1O14980 1071 aaKnown RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 TIMM44O43615 452 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 USP2O75604 605 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CABYRO75952 493 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 LGALS2P05162 132 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 APOA4P06727 396 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 C8BP07358 591 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CYP2C8P10632 490 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 CKMT2P17540 419 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 PSMC3P17980 439 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 KCNA5P22460 613 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 ARNTP27540 789 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 GRM5P41594 1212 aa5.49□□□□□ -1.53
LIMA1-212ENST00000552491 STT3AP46977 705 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms