RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 PFN3P60673 137 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 FKBP3Q00688 224 aaKnown RBP13□□□□□ -0.33
SCAF11-208ENST00000546534 PKP1Q13835 747 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 PRRT3Q5FWE3 981 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 ANKRD40Q6AI12 368 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 C22orf39Q6P5X5 142 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 DPY19L3Q6ZPD9 716 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 RAB11FIP2Q7L804 512 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 ARHGEF19Q8IW93 802 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 DEFB106AQ8N104 65 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 LMO3Q8TAP4 145 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 BTN2A2Q8WVV5 523 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 PPP1R16AQ96I34 528 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 PPP1R13BQ96KQ4 1090 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 LENG8Q96PV6 779 aaPredicted RBP13□□□□□ -0.33
SCAF11-208ENST00000546534 MED15Q96RN5 788 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 SEMA3CQ99985 751 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 C2orf49Q9BVC5 232 aaPredicted RBP13□□□□□ -0.33
SCAF11-208ENST00000546534 C1QTNF2Q9BXJ5 285 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 METTL14Q9HCE5 456 aaKnown RBP13□□□□□ -0.33
SCAF11-208ENST00000546534 APOBEC3BQ9UH17 382 aaKnown RBP13□□□□□ -0.33
SCAF11-208ENST00000546534 ACSL6Q9UKU0 697 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 PNMA8BQ9ULN7 279 aaPredicted RBP13□□□□□ -0.33
SCAF11-208ENST00000546534 TLN1Q9Y490 2541 aaKnown RBP13□□□□□ -0.33
SCAF11-208ENST00000546534 DOPEY2Q9Y3R5 2298 aa13□□□□□ -0.33
SCAF11-208ENST00000546534 FAM237AA0A1B0GTK4 181 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 IGLON5A6NGN9 336 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 LMO7DNF2Z398 122 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 YY2O15391 372 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 PAGE1O75459 146 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 ANXA6P08133 673 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 RHOCP08134 193 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 SFTPCP11686 197 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 L1CAMP32004 1257 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 RECQLP46063 649 aaPredicted RBP12.99□□□□□ -0.33
SCAF11-208ENST00000546534 TLE1Q04724 770 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 SGCGQ13326 291 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 TBR1Q16650 682 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 C5orf22Q49AR2 442 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 PHACTR4Q8IZ21 702 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 SLC2A13Q96QE2 648 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 TSG101Q99816 390 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 LRRC61Q9BV99 259 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 FOXP3Q9BZS1 431 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 CLPBQ9H078 707 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 SIK2Q9H0K1 926 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 AHCTF1Q8WYP5 2266 aa12.99□□□□□ -0.33
SCAF11-208ENST00000546534 A0A0D9SEW6 157 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 PMM2O15305 246 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 AP1G1O43747 822 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 ZNF821O75541 412 aaPredicted RBP12.98□□□□□ -0.33
SCAF11-208ENST00000546534 LIPCP11150 499 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 TSHRP16473 764 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 ITGB7P26010 798 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 GCNT1Q02742 428 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 NME3Q13232 169 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 EIF3IQ13347 325 aaKnown RBP12.98□□□□□ -0.33
SCAF11-208ENST00000546534 ALFQ53S48 1182 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 ESRP1Q6NXG1 681 aaKnown RBP12.98□□□□□ -0.33
SCAF11-208ENST00000546534 PARS2Q7L3T8 475 aaKnown RBP12.98□□□□□ -0.33
SCAF11-208ENST00000546534 VASH2Q86V25 355 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 DCAF4L2Q8NA75 395 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 KREMEN1Q96MU8 473 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 GFM1Q96RP9 751 aaKnown RBP12.98□□□□□ -0.33
SCAF11-208ENST00000546534 SRRTQ9BXP5 876 aaKnown RBP12.98□□□□□ -0.33
SCAF11-208ENST00000546534 GULP1Q9UBP9 304 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 TRPM6Q9BX84 2022 aa12.98□□□□□ -0.33
SCAF11-208ENST00000546534 TRIM49BA6NDI0 452 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 D6RAR5 112 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 NVLO15381 856 aaKnown RBP12.97□□□□□ -0.33
SCAF11-208ENST00000546534 PPFIA2O75334 1257 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 GRAP2O75791 330 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 LETM1O95202 739 aaPredicted RBP12.97□□□□□ -0.33
SCAF11-208ENST00000546534 CELA2BP08218 269 aaPredicted RBP12.97□□□□□ -0.33
SCAF11-208ENST00000546534 GP1BBP13224 206 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 WT1P19544 449 aaPredicted RBP12.97□□□□□ -0.33
SCAF11-208ENST00000546534 DNA2P51530 1060 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 THOP1P52888 689 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 CYP4F2P78329 520 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 CCL7P80098 99 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 MTA1Q13330 715 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 UBAP2LQ14157 1087 aaKnown RBP12.97□□□□□ -0.33
SCAF11-208ENST00000546534 CLCA4Q14CN2 919 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 MEA1Q16626 185 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 SWT1Q5T5J6 900 aaKnown RBP12.97□□□□□ -0.33
SCAF11-208ENST00000546534 FAXCQ5TGI0 409 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 ZSCAN30Q86W11 494 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 DENND6BQ8NEG7 585 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 OR7D4Q8NG98 312 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 HTR3CQ8WXA8 447 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 ASB12Q8WXK4 309 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 CCDC74AQ96AQ1 378 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 SPATA32Q96LK8 384 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 TBATAQ96M53 351 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 HEPHQ9BQS7 1158 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 SLC13A1Q9BZW2 595 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 STRADBQ9C0K7 418 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 SLC25A18Q9H1K4 315 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 GOLPH3LQ9H4A5 285 aa12.97□□□□□ -0.33
SCAF11-208ENST00000546534 PISDQ9UG56 409 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms