RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, human

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33A-208	ENST00000543633	MRPL1	Q9BYD6	325 aa	Known RBP	13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	TUT1	Q9H6E5	874 aa	Known RBP	13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	CHRAC1	Q9NRG0	131 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	RUVBL2	Q9Y230	463 aa	Known RBP	13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	AAR2	Q9Y312	384 aa	Known RBP	13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	TANC1	Q9C0D5	1861 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	SPTLC1	O15269	473 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	ZNF286B	P0CG31	522 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	STMN1	P16949	149 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	ZNF23	P17027	643 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	ZNF26	P17031	533 aa	Predicted RBP	13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	ATP5F1	P24539	256 aa	Predicted RBP	13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	ZBTB17	Q13105	803 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	NME3	Q13232	169 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	ITGA7	Q13683	1181 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	TRIM25	Q14258	630 aa	Known RBP	13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	SMAD1	Q15797	465 aa	Known RBP	13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	NXN	Q6DKJ4	435 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	PKN3	Q6P5Z2	889 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	TP53INP2	Q8IXH6	220 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	GPR78	Q96P69	363 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	FTHL17	Q9BXU8	183 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	GRIP2	Q9C0E4	1043 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	TMPRSS4	Q9NRS4	437 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	XPR1	Q9UBH6	696 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	PLXNB2	O15031	1838 aa		13.9	□□□□□ -0.18
VPS33A-208	ENST00000543633	AMH	P03971	560 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	SPATA31D3	P0C874	917 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	ATP4B	P51164	291 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	INHBC	P55103	352 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	DAOA	P59103	153 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	PSME3	P61289	254 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	TUBA4A	P68366	448 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	RHD	Q02161	417 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	GALNT1	Q10472	559 aa	Predicted RBP	13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	SYPL2	Q5VXT5	272 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	CLEC20A	Q6ZU45	233 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	SPATA31D4	Q6ZUB0	917 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	NPW	Q8N729	165 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	ACVR1C	Q8NER5	493 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	ZFP28	Q8NHY6	868 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	GTF3C2	Q8WUA4	911 aa	Predicted RBP	13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	PRPF18	Q99633	342 aa	Known RBP	13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	EFHD1	Q9BUP0	239 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	CNGB3	Q9NQW8	809 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	IPO11	Q9UI26	975 aa	Known RBP	13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	PCDHGA7	Q9Y5G6	932 aa		13.89	□□□□□ -0.19
VPS33A-208	ENST00000543633	SMIM28	A0A1B0GU29	152 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	HEATR9	A2RTY3	570 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	FAM155A	B1AL88	458 aa	Predicted RBP	13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	FAM72C	H0Y354	149 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	TRIM24	O15164	1050 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	CFLAR	O15519	480 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	PHGDH	O43175	533 aa	Known RBP	13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	ANXA9	O76027	345 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	PGK1	P00558	417 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	PTPN1	P18031	435 aa	Known RBP	13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	ABCG1	P45844	678 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	HPCA	P84074	193 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	CDKL1	Q00532	357 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633		Q3C1V9	767 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	MGAT5B	Q3V5L5	792 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	GLRA4	Q5JXX5	417 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	FAM72A	Q5TYM5	149 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	TMEM198	Q66K66	360 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	FAM72D	Q6L9T8	149 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	FAM45BP	Q6NSW5	357 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	POTEH	Q6S545	545 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	OSTM1	Q86WC4	334 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	FAM72B	Q86X60	149 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	NETO2	Q8NC67	525 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	FAM45A	Q8TCE6	357 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	USP13	Q92995	863 aa	Predicted RBP	13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	APBA2	Q99767	749 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	NXF3	Q9H4D5	531 aa	Known RBP	13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	MEAF6	Q9HAF1	191 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	EML4	Q9HC35	981 aa	Known RBP	13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	NMRK2	Q9NPI5	230 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	APPL1	Q9UKG1	709 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	GJD2	Q9UKL4	321 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	PACSIN3	Q9UKS6	424 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	AP4S1	Q9Y587	144 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	SHROOM3	Q8TF72	1996 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	SYNJ2BP-COX16	A0A087WUM0	186 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	FAM95C	A0A1B0GW59	222 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	TCRBV3S1	A0A5B6	114 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	GPR32	O75388	356 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	RNASEH2A	O75792	299 aa	Known RBP	13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	AHSG	P02765	367 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	FYN	P06241	537 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	FAM200B	P0CF97	657 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	LRPAP1	P30533	357 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	SLC7A1	P30825	629 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	CYP2C18	P33260	490 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	ALDH3B2	P48448	385 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	POU4F1	Q01851	419 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	ILF2	Q12905	390 aa	Known RBP	13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	C6orf52	Q5T4I8	152 aa		13.88	□□□□□ -0.19
VPS33A-208	ENST00000543633	TSTD2	Q5T7W7	516 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms