RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	THRA	P10827	490 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	NFKB1	P19838	968 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	CD68	P34810	354 aa	Predicted RBP	12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	THOP1	P52888	689 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	ATXN3	P54252	364 aa	Predicted RBP	12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	MRPS22	P82650	360 aa	Known RBP	12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	LSM12	Q3MHD2	195 aa	Known RBP	12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	SLC39A12	Q504Y0	691 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	FAM171B	Q6P995	826 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	PDZD4	Q76G19	769 aa	Predicted RBP	12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	SPATA2L	Q8IUW3	424 aa	Predicted RBP	12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	DSEL	Q8IZU8	1212 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	RNF148	Q8N7C7	305 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	NAT14	Q8WUY8	206 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	SREK1	Q8WXA9	508 aa	Known RBP	12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	NTAN1	Q96AB6	310 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	CDRT15	Q96T59	188 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	SLC9A7	Q96T83	725 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	NUF2	Q9BZD4	464 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	IARS2	Q9NSE4	1012 aa	Known RBP	12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	C20orf96	Q9NUD7	363 aa	Predicted RBP	12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	OXSM	Q9NWU1	459 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	PCDHGB4	Q9UN71	923 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	PSMD13	Q9UNM6	376 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	PCDHGB5	Q9Y5G0	923 aa		12.69	□□□□□ -0.38
RNF4-222	ENST00000541204	MATN2	O00339	956 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	CFLAR	O15519	480 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	ZNF623	O75123	536 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	CXCR3	P49682	368 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	SLC5A3	P53794	718 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	PKNOX1	P55347	436 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	MPP3	Q13368	585 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	OTOP3	Q7RTS5	596 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	KCNMB4	Q86W47	210 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	BTBD9	Q96Q07	612 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	HAPLN3	Q96S86	360 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	TASP1	Q9H6P5	420 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	CSNK1G1	Q9HCP0	422 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	VCX3A	Q9NNX9	186 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	CLIC5	Q9NZA1	410 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	SLC39A10	Q9ULF5	831 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	COMMD3-BMI1	R4GMX3	469 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	LAMA2	P24043	3122 aa	Known RBP	12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	NUP205	Q92621	2012 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	TRPM7	Q96QT4	1865 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	RGSL1	A5PLK6	1076 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	AOC2	O75106	756 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	DDHD2	O94830	711 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	F9	P00740	461 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	FAM163B	P0C2L3	166 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	OR1G1	P47890	313 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	GRIA4	P48058	902 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	GLRB	P48167	497 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	GPR15	P49685	360 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	RPS6KA3	P51812	740 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	TSPY1	Q01534	308 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	YWHAH	Q04917	246 aa	Predicted RBP	12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	DSC3	Q14574	896 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	TMEM198	Q66K66	360 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	SEL1L3	Q68CR1	1132 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	THEM5	Q8N1Q8	247 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	KY	Q8NBH2	561 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	USP13	Q92995	863 aa	Predicted RBP	12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	VPS39	Q96JC1	886 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	MARK4	Q96L34	752 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	B3GALT6	Q96L58	329 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	ACE2	Q9BYF1	805 aa	Predicted RBP	12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	SLC4A7	Q9Y6M7	1214 aa		12.68	□□□□□ -0.38
RNF4-222	ENST00000541204	KLHL33	A6NCF5	533 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204		C9IYK1	514 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	PIGN	O95427	931 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	SPATA31D3	P0C874	917 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	XRCC1	P18887	633 aa	Predicted RBP	12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	PML	P29590	882 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	PPID	Q08752	370 aa	Known RBP	12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	SCAP	Q12770	1279 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	FLOT2	Q14254	428 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	DDR2	Q16832	855 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	ARL13A	Q5H913	290 aa	Predicted RBP	12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	BTBD8	Q5XKL5	378 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	C16orf89	Q6UX73	402 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	SPATA31D4	Q6ZUB0	917 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	SPATA22	Q8NHS9	363 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	RCN3	Q96D15	328 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	NMD3	Q96D46	503 aa	Known RBP	12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	CATSPER2	Q96P56	530 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	NDN	Q99608	321 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	MLPH	Q9BV36	600 aa	Predicted RBP	12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	CASS4	Q9NQ75	786 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	UBAP1	Q9NZ09	502 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	C6orf203	Q9P0P8	240 aa	Predicted RBP	12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	TLL2	Q9Y6L7	1015 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	TTC3	P53804	2025 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	HDAC3	O15379	428 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	PHGDH	O43175	533 aa	Known RBP	12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	DNAJA2	O60884	412 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	JUN	P05412	331 aa	Known RBP	12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	SMIM18	P0DKX4	95 aa		12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	ENO3	P13929	434 aa	Predicted RBP	12.67	□□□□□ -0.38
RNF4-222	ENST00000541204	GRK4	P32298	578 aa		12.67	□□□□□ -0.38

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