RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 TMEM92Q6UXU6 159 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 C4orf22Q6V702 233 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 Q6ZVU0 165 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 ZSCAN30Q86W11 494 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 LONP2Q86WA8 852 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 PGBD3Q8N328 593 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 OR2A12Q8NGT7 310 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 HTR3CQ8WXA8 447 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 NKD2Q969F2 451 aaPredicted RBP17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 SPACA7Q96KW9 195 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 ZNF641Q96N77 438 aaPredicted RBP17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 QKIQ96PU8 341 aaKnown RBP eCLIP17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 MGME1Q9BQP7 344 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 FCF1Q9Y324 198 aaKnown RBP17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 DCHS1Q96JQ0 3298 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 MUC22E2RYF6 1773 aaPredicted RBP17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 SMAD6O43541 496 aaKnown RBP17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 ATP1A1P05023 1023 aaKnown RBP17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 HLA-EP13747 358 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 POLR2LP62875 67 aaKnown RBP17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 SATB1Q01826 763 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 CSTF1Q05048 431 aaKnown RBP17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 CYTH1Q15438 398 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 SLC14A2Q15849 920 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 TEX44Q53QW1 395 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 ALG1LQ6GMV1 187 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 ITPRIPL1Q6GPH6 555 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 DARS2Q6PI48 645 aaKnown RBP17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 ZC3H18Q86VM9 953 aaKnown RBP17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 WDR5BQ86VZ2 330 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 NDUFAF2Q8N183 169 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 RYBPQ8N488 228 aaPredicted RBP17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 NUDCD1Q96RS6 583 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 LGMNQ99538 433 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 IL12RB2Q99665 862 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 ATP13A3Q9H7F0 1226 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 RBM22Q9NW64 420 aaKnown RBP eCLIP17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 ZSCAN32Q9NX65 697 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 PPM1HQ9ULR3 514 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 PCDHGA2Q9Y5H1 932 aa17.77■□□□□ 0.44
CLSTN3-210ENST00000540931 CKAP5Q14008 2032 aa17.77■□□□□ 0.43
CLSTN3-210ENST00000540931 EP300Q09472 2414 aaPredicted RBP17.77■□□□□ 0.43
CLSTN3-210ENST00000540931 CACNA1AO00555 2505 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 GOLGA6CA6NDK9 693 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 GOLGA6BA6NDN3 693 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 K7ERQ8 282 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 K7ESF4 209 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 AXIN1O15169 862 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 SLC7A4O43246 635 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 PEX11BO96011 259 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 GOLGA6DP0CG33 693 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 PECAM1P16284 738 aaPredicted RBP17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 SERPINA4P29622 427 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 TNNT3P45378 269 aaPredicted RBP17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 CCNHP51946 323 aaPredicted RBP17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 SLC10A7Q0GE19 358 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 ANGPT1Q15389 498 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 CST6Q15828 149 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 CFAP58Q5T655 872 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 PKN3Q6P5Z2 889 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 SLC36A4Q6YBV0 504 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 DPY19L3Q6ZPD9 716 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 NYAP1Q6ZVC0 841 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 ERMP1Q7Z2K6 904 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 SRLQ86TD4 932 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 HMGB4Q8WW32 186 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 RAB7BQ96AH8 199 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 MRGPRX1Q96LB2 322 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 RUNDC3BQ96NL0 473 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 PCED1AQ9H1Q7 454 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 KDM4CQ9H3R0 1056 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 CD248Q9HCU0 757 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 GOLGA6AQ9NYA3 693 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 FZD4Q9ULV1 537 aa17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 DRG1Q9Y295 367 aaKnown RBP17.76■□□□□ 0.43
CLSTN3-210ENST00000540931 BNIP3LO60238 219 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 SOCS5O75159 536 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 ZNF821O75541 412 aaPredicted RBP17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 IL1BP01584 269 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 SERPINF2P08697 491 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 GABRG2P18507 467 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 COPAP53621 1224 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 BCL2L1Q07817 233 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 ADCY2Q08462 1091 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 SPDYCQ5MJ68 293 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 ANO7Q6IWH7 933 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 KIAA1211LQ6NV74 962 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 BRAT1Q6PJG6 821 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 NPNTQ6UXI9 565 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 ARHGAP36Q6ZRI8 547 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 STK40Q8N2I9 435 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 TSEN2Q8NCE0 465 aaKnown RBP17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 SLC35B2Q8TB61 432 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 SPOCK2Q92563 424 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 WDR24Q96S15 920 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 FAM129BQ96TA1 746 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 TM6SF2Q9BZW4 377 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 SCUBE2Q9NQ36 999 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 ITM2CQ9NQX7 267 aa17.75■□□□□ 0.43
CLSTN3-210ENST00000540931 SAE1Q9UBE0 346 aaPredicted RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 145.9 ms