RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 USP27XA6NNY8 438 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 YJEFN3A6XGL0 299 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 E7ENQ6 273 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 LATO43561 262 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 CSO75390 466 aaKnown RBP12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 GABBR2O75899 941 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 GIMD1P0DJR0 217 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 GP1BBP13224 206 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 PDGFRAP16234 1089 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 SULT1E1P49888 294 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 EFEMP1Q12805 493 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 CDO1Q16878 200 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 DCAF6Q58WW2 860 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 BSPRYQ5W0U4 402 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 PM20D1Q6GTS8 502 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 DAAM2Q86T65 1068 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 DEFB106AQ8N104 65 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 C17orf53Q8N3J3 647 aaPredicted RBP12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 EMC1Q8N766 993 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 JOSD2Q8TAC2 188 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 RXFP2Q8WXD0 754 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 EDEM1Q92611 657 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 SERAC1Q96JX3 654 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 SLC46A1Q96NT5 459 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 DEPDC7Q96QD5 511 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 THSD1Q9NS62 852 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 ABCB8Q9NUT2 735 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 FZD4Q9ULV1 537 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 HEMK1Q9Y5R4 338 aaPredicted RBP12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 DUSP10Q9Y6W6 482 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 SPTBN1Q01082 2364 aaKnown RBP12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 SYNJ2BP-COX16A0A087WUM0 186 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 LY6G6EA0A0G2JKS1 128 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 A0A1B0GVM2 712 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 A0A1W2PP55 124 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 MID1O15344 667 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 SPOPO43791 374 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 SDC3O75056 442 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 RNF8O76064 485 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 CKMT1AP12532 417 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 NOS2P35228 1153 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 RFC1P35251 1148 aaPredicted RBP12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 ARHGAP25P42331 645 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 RPL7AP62424 266 aaKnown RBP12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 PIGHQ14442 188 aaPredicted RBP12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 TAF5Q15542 800 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 MPPE1Q53F39 396 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 MBLAC2Q68D91 279 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 CCDC81Q6ZN84 652 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 ATG14Q6ZNE5 492 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 SND1Q7KZF4 910 aaKnown RBP eCLIP12.78□□□□□ -0.362e-8■■■□□ 18
CLSTN3-208ENST00000538933 REXO1L1PQ8IX06 675 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 AADATQ8N5Z0 425 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 TRIM58Q8NG06 486 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 WFDC5Q8TCV5 224 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 GANCQ8TET4 914 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 BTBD6Q96KE9 485 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 LMLNQ96KR4 655 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 CDK5RAP1Q96SZ6 601 aaKnown RBP12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 FAM204AQ9H8W3 233 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 OLA1Q9NTK5 396 aaKnown RBP12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 RRN3Q9NYV6 651 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 COX16Q9P0S2 106 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 RASAL2Q9UJF2 1139 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 GGA2Q9UJY4 613 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 STOML2Q9UJZ1 356 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 U3KQA8 63 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 RP1P56715 2156 aa12.78□□□□□ -0.36
CLSTN3-208ENST00000538933 TCRBV5S1A1TA0A578 114 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 CLEC18AA5D8T8 446 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 TMEM191CA6NGB0 347 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 C2CD4BA6NLJ0 364 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 CDRT15L2A8MXV6 281 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 SIN3BO75182 1162 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 MTA2O94776 668 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 PABPC1P11940 636 aaKnown RBP12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 FLT3P36888 993 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 ZNF143P52747 638 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 HADHBP55084 474 aaKnown RBP12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 GNG11P61952 73 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 ATP11AP98196 1134 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 CLN3Q13286 438 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 UBAP2LQ14157 1087 aaKnown RBP12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 TCEAL1Q15170 157 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 TRIP4Q15650 581 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 CST6Q15828 149 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 ODF2Q5BJF6 829 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 ZNF569Q5MCW4 686 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 ZFYVE27Q5T4F4 411 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 C9orf64Q5T6V5 341 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 XKR5Q6UX68 686 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 CLEC18BQ6UXF7 455 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 ARCQ7LC44 396 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 IQCHQ86VS3 1027 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 AHI1Q8N157 1196 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 CLEC18CQ8NCF0 446 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 OR4C6Q8NH72 309 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 TPCN2Q8NHX9 752 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 FNIP1Q8TF40 1166 aa12.77□□□□□ -0.37
CLSTN3-208ENST00000538933 RNF34Q969K3 372 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms