RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	SMAD6	O43541	496 aa	Known RBP	11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	AP1G1	O43747	822 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	SNAP91	O60641	907 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	ZNF821	O75541	412 aa	Predicted RBP	11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	ERBB2	P04626	1255 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	RHOC	P08134	193 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	PRLR	P16471	622 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	PON1	P27169	355 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	KRT9	P35527	623 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	USP8	P40818	1118 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	GABRB2	P47870	512 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	NUMB	P49757	651 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	UCN	P55089	124 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	STX17	P56962	302 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	PCBP4	P57723	403 aa	Known RBP	11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	HNRNPK	P61978	463 aa	Known RBP eCLIP	11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	RPS21	P63220	83 aa	Known RBP	11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	MYL5	Q02045	173 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	POM121L1P	Q3SYA9	428 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	ALF	Q53S48	1182 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	KIAA1161	Q6NSJ0	714 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	GJB7	Q6PEY0	223 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	PCSK4	Q6UW60	755 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	LRRC31	Q6UY01	552 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	KDM7A	Q6ZMT4	941 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	GBP6	Q6ZN66	633 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	GCNT7	Q6ZNI0	430 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	SLC22A18AS	Q8N1D0	253 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	ASB12	Q8WXK4	309 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	FEM1C	Q96JP0	617 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	PDLIM2	Q96JY6	352 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	BMF	Q96LC9	184 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	APOLD1	Q96LR9	279 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	LENG8	Q96PV6	779 aa	Predicted RBP	11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	DEPDC7	Q96QD5	511 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	CRACR2A	Q9BSW2	395 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	SLC17A9	Q9BYT1	436 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	CEP44	Q9C0F1	390 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	TKTL2	Q9H0I9	626 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	SIK2	Q9H0K1	926 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	POLR1B	Q9H9Y6	1135 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	ANLN	Q9NQW6	1124 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	EVA1B	Q9NVM1	165 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	NCKIPSD	Q9NZQ3	722 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	COX16	Q9P0S2	106 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	IL36A	Q9UHA7	158 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	STAP1	Q9ULZ2	295 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	WASF2	Q9Y6W5	498 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647		U3KQA8	63 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647	MYLK	Q15746	1914 aa		11.78	□□□□□ -0.52
CTNND1-238	ENST00000534647		A0A0D9SEW6	157 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	SPTY2D1-AS1	A0A0U1RR47	76 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647		K7ESM1	405 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	ERVH48-1	M5A8F1	160 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	RNF103	O00237	685 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	BNIP3L	O60238	219 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	ZMPSTE24	O75844	475 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	PCDH8	O95206	1070 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	CSF2	P04141	144 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	RRM1	P23921	792 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	CDH5	P33151	784 aa	Predicted RBP	11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	RECQL	P46063	649 aa	Predicted RBP	11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	NEK3	P51956	506 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	BPIFB4	P59827	614 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	RHD	Q02161	417 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	FZD2	Q14332	565 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	ARHGAP44	Q17R89	818 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	EXOC3L4	Q17RC7	722 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	SLC25A52	Q3SY17	297 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	PTPN20	Q4JDL3	420 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	RETSAT	Q6NUM9	610 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	C22orf39	Q6P5X5	142 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	KYAT3	Q6YP21	454 aa	Known RBP	11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	DPY19L3	Q6ZPD9	716 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647		Q6ZSR6	202 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	ARC	Q7LC44	396 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	BNIPL	Q7Z465	357 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	DRC7	Q8IY82	874 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	ZNF843	Q8N446	348 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	CHST14	Q8NCH0	376 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	KLK6	Q92876	244 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	HAPLN3	Q96S86	360 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	OCSTAMP	Q9BR26	566 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	C1QTNF2	Q9BXJ5	285 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	CALN1	Q9BXU9	219 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	DPH1	Q9BZG8	443 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	RETREG1	Q9H6L5	497 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	MAP10	Q9P2G4	905 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	ZNF212	Q9UDV6	495 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	RWDD2A	Q9UIY3	292 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	PCDHB1	Q9Y5F3	818 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	SHROOM3	Q8TF72	1996 aa		11.77	□□□□□ -0.53
CTNND1-238	ENST00000534647	ASH1L	Q9NR48	2969 aa	Known RBP	11.76	□□□□□ -0.53
CTNND1-238	ENST00000534647	ZNF462	Q96JM2	2506 aa		11.76	□□□□□ -0.53
CTNND1-238	ENST00000534647	FOXN3	O00409	490 aa	Predicted RBP	11.76	□□□□□ -0.53
CTNND1-238	ENST00000534647	TPP1	O14773	563 aa		11.76	□□□□□ -0.53
CTNND1-238	ENST00000534647	FFAR2	O15552	330 aa		11.76	□□□□□ -0.53
CTNND1-238	ENST00000534647	USP12	O75317	370 aa		11.76	□□□□□ -0.53
CTNND1-238	ENST00000534647	LEFTY1	O75610	366 aa		11.76	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms