RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 OSBPL1AQ9BXW6 950 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 NRSN2Q9GZP1 204 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 ABCG4Q9H172 646 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 ANO10Q9NW15 660 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 TMEM248Q9NWD8 314 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 UCKL1Q9NWZ5 548 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 A0A087WV48 116 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 ZSCAN5CA6NGD5 496 aaPredicted RBP14.98□□□□□ -0.01
VPS28-215ENST00000531924 IGLON5A6NGN9 336 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 C16orf96A6NNT2 1141 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 GOLGA6L22H0YM25 854 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 RNF103O00237 685 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 PIAS2O75928 621 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 LRIG2O94898 1065 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 GJB6O95452 261 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 POP4O95707 220 aaKnown RBP14.98□□□□□ -0.01
VPS28-215ENST00000531924 GSRP00390 522 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 CCDC172P0C7W6 258 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 RFC1P35251 1148 aaPredicted RBP14.98□□□□□ -0.01
VPS28-215ENST00000531924 ABCG1P45844 678 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 RABIFP47224 123 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 DUSP3P51452 185 aaPredicted RBP14.98□□□□□ -0.01
VPS28-215ENST00000531924 COPB1P53618 953 aaKnown RBP14.98□□□□□ -0.01
VPS28-215ENST00000531924 CLEC16AQ2KHT3 1053 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 RAB6CQ53S08 254 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 ZNF805Q5CZA5 627 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 EFHC2Q5JST6 749 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 DNAJC24Q6P3W2 148 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 KYAT3Q6YP21 454 aaKnown RBP14.98□□□□□ -0.01
VPS28-215ENST00000531924 LEKR1Q6ZMV7 388 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 CCDC185Q8N715 623 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 OR2AP1Q8NGE2 309 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 BAP1Q92560 729 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 DUSP23Q9BVJ7 150 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 RAB6CQ9H0N0 254 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 LMBRD1Q9NUN5 540 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 NLGN3Q9NZ94 848 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 ACTL7AQ9Y615 435 aa14.98□□□□□ -0.01
VPS28-215ENST00000531924 GOLGA4Q13439 2230 aaKnown RBP14.98□□□□□ -0.01
VPS28-215ENST00000531924 ACACAQ13085 2346 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 FAM72CH0Y354 149 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 EPHB6O15197 1021 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 KDELR3O43731 214 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 UGT2B4P06133 528 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 UNGP13051 313 aaPredicted RBP14.97□□□□□ -0.01
VPS28-215ENST00000531924 XPAP23025 273 aaPredicted RBP14.97□□□□□ -0.01
VPS28-215ENST00000531924 EPHB2P29323 1055 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 GKP32189 559 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 HDAC4P56524 1084 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 INSM1Q01101 510 aaPredicted RBP14.97□□□□□ -0.01
VPS28-215ENST00000531924 MYL5Q02045 173 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 MYLK3Q32MK0 819 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 FAM72AQ5TYM5 149 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 MANEALQ5VSG8 457 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 FAM72DQ6L9T8 149 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 KDM7AQ6ZMT4 941 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 TTC7BQ86TV6 843 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 NLRP14Q86W24 1093 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 PARGQ86W56 976 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 FAM72BQ86X60 149 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 PHF13Q86YI8 300 aaPredicted RBP14.97□□□□□ -0.01
VPS28-215ENST00000531924 SLC22A18ASQ8N1D0 253 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 C3orf20Q8ND61 904 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 CENPIQ92674 756 aaPredicted RBP14.97□□□□□ -0.01
VPS28-215ENST00000531924 NTAN1Q96AB6 310 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 BMFQ96LC9 184 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 GDAP1L1Q96MZ0 367 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 C1QTNF7Q9BXJ2 289 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 NDFIP2Q9NV92 336 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 SIK3Q9Y2K2 1263 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 APC2O95996 2303 aa14.97□□□□□ -0.01
VPS28-215ENST00000531924 POM121BA6NF01 834 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 SIGLEC16A6NMB1 481 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 LGALS16A8MUM7 142 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 SCAMP1O15126 338 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 CREB3O43889 395 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 IGSF6O95976 241 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 MT-CO3P00414 261 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 CKMT1AP12532 417 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 ACTN2P35609 894 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 ATRXP46100 2492 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 THOP1P52888 689 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 PDE1CQ14123 709 aaPredicted RBP14.96□□□□□ -0.01
VPS28-215ENST00000531924 RTP5Q14D33 572 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 STX1AQ16623 288 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 ATXN7L2Q5T6C5 722 aaPredicted RBP14.96□□□□□ -0.01
VPS28-215ENST00000531924 DCUN1D2Q6PH85 259 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 WDR59Q6PJI9 974 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 GDPD4Q6W3E5 623 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 CACTIN-AS1Q8N1I8 211 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 CASKIN2Q8WXE0 1202 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 RFFLQ8WZ73 363 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 KLHL32Q96NJ5 620 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 LENG8Q96PV6 779 aaPredicted RBP14.96□□□□□ -0.01
VPS28-215ENST00000531924 PCDHB18PQ96TA0 734 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 EPAS1Q99814 870 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 AGPAT1Q99943 283 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 NCAPGQ9BPX3 1015 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 C1QTNF2Q9BXJ5 285 aa14.96□□□□□ -0.01
VPS28-215ENST00000531924 CATSPERBQ9H7T0 1116 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms