RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	ZNF618	Q5T7W0	954 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	SPECC1L	Q69YQ0	1117 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	OR52E8	Q6IFG1	317 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	FAM122C	Q6P4D5	195 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	CCDC129	Q6ZRS4	1044 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	ITIH5	Q86UX2	942 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	CHD1L	Q86WJ1	897 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	ARFGAP2	Q8N6H7	521 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	ZNF713	Q8N859	430 aa	Predicted RBP	5.8	□□□□□ -1.48
CD44-231	ENST00000531110	RASSF5	Q8WWW0	418 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	ZNF606	Q8WXB4	792 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	SPSB4	Q96A44	273 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	SH3KBP1	Q96B97	665 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	TSG101	Q99816	390 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	DHRS9	Q9BPW9	319 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	B3GNT4	Q9C0J1	378 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	5.8	□□□□□ -1.48
CD44-231	ENST00000531110	CARD9	Q9H257	536 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	CLSTN2	Q9H4D0	955 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	DBNDD1	Q9H9R9	158 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	TRPC7	Q9HCX4	862 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	THAP1	Q9NVV9	213 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	EHD3	Q9NZN3	535 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	ASIC3	Q9UHC3	531 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	HDAC9	Q9UKV0	1011 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	KDM6A	O15550	1401 aa	Predicted RBP	5.8	□□□□□ -1.48
CD44-231	ENST00000531110	MROH7	Q68CQ1	1323 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	NPHP3	Q7Z494	1330 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	SNAPC4	Q5SXM2	1469 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110		A0A0J9YVX5	310 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	CCDC169	A6NNP5	214 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	MIF4GD	A9UHW6	222 aa	Known RBP	5.79	□□□□□ -1.48
CD44-231	ENST00000531110	PYCARD-AS1	I3L0S3	204 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	HIP1	O00291	1037 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	APOL1	O14791	398 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	FYB1	O15117	783 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	ALOX15B	O15296	676 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	NCAM2	O15394	837 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	SUPT3H	O75486	399 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	TSPAN9	O75954	239 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	INMT	O95050	263 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	SYF2	O95926	243 aa	Known RBP	5.79	□□□□□ -1.48
CD44-231	ENST00000531110	ONECUT2	O95948	504 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	ITGA2B	P08514	1039 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	MYL3	P08590	195 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	CDK4	P11802	303 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	SP100	P23497	879 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-231	ENST00000531110	ANXA13	P27216	316 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	NUDT1	P36639	197 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	RGS2	P41220	211 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	UBA7	P41226	1012 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	GRIA3	P42263	894 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	ABCG1	P45844	678 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	ETV1	P50549	477 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	DGKE	P52429	567 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	SOX10	P56693	466 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	SRP54	P61011	504 aa	Known RBP	5.79	□□□□□ -1.48
CD44-231	ENST00000531110	CDK18	Q07002	472 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	AP1B1	Q10567	949 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	FSTL1	Q12841	308 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	GNA13	Q14344	377 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	TSC22D1	Q15714	1073 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	CFAP221	Q4G0U5	840 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	KCNT1	Q5JUK3	1230 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	OR7E24	Q6IFN5	339 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	NEK5	Q6P3R8	708 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	IKBIP	Q70UQ0	350 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	ATG9A	Q7Z3C6	839 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	C12orf56	Q8IXR9	622 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	ENAH	Q8N8S7	591 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-231	ENST00000531110	CNBD1	Q8NA66	436 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	DDHD1	Q8NEL9	900 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	PJA1	Q8NG27	643 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	SLC2A14	Q8TDB8	520 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-231	ENST00000531110	IPCEF1	Q8WWN9	437 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-231	ENST00000531110	CIDEC	Q96AQ7	238 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-231	ENST00000531110	FKBP10	Q96AY3	582 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	SGF29	Q96ES7	293 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	PPP1R13B	Q96KQ4	1090 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	EGLN2	Q96KS0	407 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	IFT74	Q96LB3	600 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	CIB1	Q99828	191 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	MS4A7	Q9GZW8	240 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-231	ENST00000531110	KCNMB3	Q9NPA1	279 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	CCDC177	Q9NQR7	707 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-231	ENST00000531110	C9orf78	Q9NZ63	289 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-231	ENST00000531110	PTTG2	Q9NZH5	202 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	COL20A1	Q9P218	1284 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	SLC7A8	Q9UHI5	535 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	FBXL5	Q9UKA1	691 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	NDRG4	Q9ULP0	352 aa	Known RBP	5.79	□□□□□ -1.48
CD44-231	ENST00000531110	DUSP12	Q9UNI6	340 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	CHMP2B	Q9UQN3	213 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	ZBTB1	Q9Y2K1	713 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	SNX5	Q9Y5X3	404 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	5.79	□□□□□ -1.48
CD44-231	ENST00000531110	AKAP12	Q02952	1782 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	FAM135B	Q49AJ0	1406 aa		5.79	□□□□□ -1.48
CD44-231	ENST00000531110	POGZ	Q7Z3K3	1410 aa		5.79	□□□□□ -1.48

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