RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 BTBD19C9JJ37 291 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 SLCO1B7G3V0H7 640 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 AP1G1O43747 822 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 PABPC4LP0CB38 370 aaKnown RBP19.51■□□□□ 0.71
VPS28-213ENST00000530983 COL6A2P12110 1019 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 DNAJB2P25686 324 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 ADSLP30566 484 aaPredicted RBP19.51■□□□□ 0.71
VPS28-213ENST00000530983 ZNF135P52742 658 aaPredicted RBP19.51■□□□□ 0.71
VPS28-213ENST00000530983 PKNOX1P55347 436 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 MS4A2Q01362 244 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 POU6F1Q14863 301 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 PCID2Q5JVF3 399 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 NXNQ6DKJ4 435 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 PGAM4Q8N0Y7 254 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 LENG1Q96BZ8 264 aaPredicted RBP19.51■□□□□ 0.71
VPS28-213ENST00000530983 NEU3Q9UQ49 428 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 COL4A4P53420 1690 aaPredicted RBP19.51■□□□□ 0.71
VPS28-213ENST00000530983 C15orf38-AP3S2A0A0A6YYH1 394 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 VAPBO95292 243 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 SPATA31D3P0C874 917 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 ARNTP27540 789 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 RAB10P61026 200 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 LSAMPQ13449 338 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 HERC3Q15034 1050 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 PRAMEF19Q5SWL8 479 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 DCLRE1AQ6PJP8 1040 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 SPATA31D4Q6ZUB0 917 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 ARPINQ7Z6K5 226 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 TAC4Q86UU9 113 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 SPATA6LQ8N4H0 392 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 KDM1BQ8NB78 822 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 USP13Q92995 863 aaPredicted RBP19.51■□□□□ 0.71
VPS28-213ENST00000530983 NXNL1Q96CM4 212 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 SLC10A4Q96EP9 437 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 TSGA13Q96PP4 275 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 WDR41Q9HAD4 459 aa19.51■□□□□ 0.71
VPS28-213ENST00000530983 TMEM233B4DJY2 109 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 ENO3P13929 434 aaPredicted RBP19.5■□□□□ 0.71
VPS28-213ENST00000530983 ARCN1P48444 511 aaKnown RBP19.5■□□□□ 0.71
VPS28-213ENST00000530983 CRYBB1P53674 252 aaPredicted RBP19.5■□□□□ 0.71
VPS28-213ENST00000530983 UGP2Q16851 508 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 PABPC1LQ4VXU2 614 aaKnown RBP19.5■□□□□ 0.71
VPS28-213ENST00000530983 DENND5AQ6IQ26 1287 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 MARVELD2Q8N4S9 558 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 RNF148Q8N7C7 305 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 TBL1YQ9BQ87 522 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 UNKQ9C0B0 810 aaKnown RBP19.5■□□□□ 0.71
VPS28-213ENST00000530983 RIMS3Q9UJD0 308 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 GNEQ9Y223 722 aaKnown RBP19.5■□□□□ 0.71
VPS28-213ENST00000530983 COPG1Q9Y678 874 aaKnown RBP19.5■□□□□ 0.71
VPS28-213ENST00000530983 FAM95CA0A1B0GW59 222 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 STX16-NPEPL1H3BU86 382 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 CFLARO15519 480 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 DENRO43583 198 aaKnown RBP19.5■□□□□ 0.71
VPS28-213ENST00000530983 TADA2AO75478 443 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 DNAJB1P25685 340 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 LHX1P48742 406 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 AFF1P51825 1210 aaKnown RBP19.5■□□□□ 0.71
VPS28-213ENST00000530983 ESRP1Q6NXG1 681 aaKnown RBP19.5■□□□□ 0.71
VPS28-213ENST00000530983 C3orf58Q8NDZ4 430 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 OMDQ99983 421 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 AAR2Q9Y312 384 aaKnown RBP19.5■□□□□ 0.71
VPS28-213ENST00000530983 COMMD3-BMI1R4GMX3 469 aa19.5■□□□□ 0.71
VPS28-213ENST00000530983 DFFAO00273 331 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 PSMD3O43242 534 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 DNAJA2O60884 412 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 ZNF33AQ06730 810 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 ADGRE1Q14246 886 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 LILRA2Q8N149 483 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 TMEM86AQ8N2M4 240 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 CCNYL1Q8N7R7 359 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 BHLHE22Q8NFJ8 381 aaPredicted RBP19.49■□□□□ 0.71
VPS28-213ENST00000530983 IPMKQ8NFU5 416 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 PIP4K2CQ8TBX8 421 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 MS4A4AQ96JQ5 239 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 SLC2A6Q9UGQ3 507 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 SLC45A1Q9Y2W3 748 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 PTCH2Q9Y6C5 1203 aa19.49■□□□□ 0.71
VPS28-213ENST00000530983 SMIM18P0DKX4 95 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 SRGAP2BP0DMP2 458 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 STMN1P16949 149 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 CLCNKBP51801 687 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 RARS2Q5T160 578 aaKnown RBP19.48■□□□□ 0.71
VPS28-213ENST00000530983 RWDD4Q6NW29 188 aaKnown RBP19.48■□□□□ 0.71
VPS28-213ENST00000530983 ZFP1Q6P2D0 407 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 SATL1Q86VE3 508 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 TICAM1Q8IUC6 712 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 TMEM126BQ8IUX1 230 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 PDCD6IPQ8WUM4 868 aaKnown RBP19.48■□□□□ 0.71
VPS28-213ENST00000530983 MAELQ96JY0 434 aaKnown RBP19.48■□□□□ 0.71
VPS28-213ENST00000530983 LRGUKQ96M69 825 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 UBAP1Q9NZ09 502 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 TCAF2A6NFQ2 919 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 CCNCP24863 283 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 SLC1A2P43004 574 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 PSEN2P49810 448 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 COG7P83436 770 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 CNGA3Q16281 694 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 ARHGAP12Q8IWW6 846 aa19.48■□□□□ 0.71
VPS28-213ENST00000530983 TXNDC5Q8NBS9 432 aaKnown RBP19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms