RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 RARRES1P49788 294 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 ELLP55199 621 aaPredicted RBP3.47□□□□□ -1.85
CD44-229ENST00000528672 PROK1P58294 105 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 WDR5P61964 334 aaKnown RBP3.47□□□□□ -1.85
CD44-229ENST00000528672 CFHR3Q02985 330 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 CNGA3Q16281 694 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 DPCR1Q3MIW9 517 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 HSP90B2PQ58FF3 399 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 BMP2KLQ5H9B9 411 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 ZNF667Q5HYK9 610 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 RAB41Q5JT25 222 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 HECTD3Q5T447 861 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 STRIP1Q5VSL9 837 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 C16orf87Q6PH81 154 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 SARM1Q6SZW1 724 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 FAM83HQ6ZRV2 1179 aaPredicted RBP3.47□□□□□ -1.85
CD44-229ENST00000528672 CHST9Q7L1S5 443 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 ZNF551Q7Z340 670 aaPredicted RBP3.47□□□□□ -1.85
CD44-229ENST00000528672 SLC46A3Q7Z3Q1 461 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 WDR53Q7Z5U6 358 aaPredicted RBP3.47□□□□□ -1.85
CD44-229ENST00000528672 BCDIN3DQ7Z5W3 292 aaKnown RBP3.47□□□□□ -1.85
CD44-229ENST00000528672 TADA2BQ86TJ2 420 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 SFTPA1Q8IWL2 248 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 ADGRF3Q8IZF5 1079 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 GHDCQ8N2G8 530 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 CPXM2Q8N436 756 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 MIGA1Q8NAN2 632 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 C11orf65Q8NCR3 313 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 CADM4Q8NFZ8 388 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 CAGE1Q8TC20 777 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 C2CD4CQ8TF44 421 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 EDC3Q96F86 508 aaKnown RBP3.47□□□□□ -1.85
CD44-229ENST00000528672 GPR78Q96P69 363 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 MAP7D2Q96T17 732 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 SLX1AQ9BQ83 275 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 CCDC94Q9BW85 323 aaPredicted RBP3.47□□□□□ -1.85
CD44-229ENST00000528672 FSD1LQ9BXM9 530 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 CIPCQ9C0C6 399 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 R3HDMLQ9H3Y0 253 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 SUDS3Q9H7L9 328 aaPredicted RBP3.47□□□□□ -1.85
CD44-229ENST00000528672 BABAM1Q9NWV8 329 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 MRPL15Q9P015 296 aaKnown RBP3.47□□□□□ -1.85
CD44-229ENST00000528672 HDAC6Q9UBN7 1215 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 CDH22Q9UJ99 828 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 TMCC3Q9ULS5 477 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 FZD4Q9ULV1 537 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 COX11Q9Y6N1 276 aa3.47□□□□□ -1.85
CD44-229ENST00000528672 LRRC53A6NM62 1247 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 QSOX1O00391 747 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 MPHOSPH10O00566 681 aaKnown RBP3.46□□□□□ -1.86
CD44-229ENST00000528672 PRYO14603 147 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 LDLRAD4O15165 306 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 KIF1CO43896 1103 aaKnown RBP3.46□□□□□ -1.86
CD44-229ENST00000528672 TBCAO75347 108 aaKnown RBP3.46□□□□□ -1.86
CD44-229ENST00000528672 TACC1O75410 805 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 TTLL1O95922 423 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 NPSP0C0P6 89 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 NEFHP12036 1026 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 NDUFB7P17568 137 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 WT1P19544 449 aaPredicted RBP3.46□□□□□ -1.86
CD44-229ENST00000528672 PAX7P23759 505 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 NDUFS1P28331 727 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 CTNNA1P35221 906 aaKnown RBP3.46□□□□□ -1.86
CD44-229ENST00000528672 TRPC1P48995 793 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 LMAN1P49257 510 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 VPS41P49754 854 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 CACNA2D1P54289 1103 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 ADPRHP54922 357 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 CDH8P55286 799 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 NANOS3P60323 173 aaKnown RBP3.46□□□□□ -1.86
CD44-229ENST00000528672 NHLH1Q02575 133 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 TFF2Q03403 129 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 AIMP1Q12904 312 aaKnown RBP3.46□□□□□ -1.86
CD44-229ENST00000528672 FRG1Q14331 258 aaKnown RBP3.46□□□□□ -1.86
CD44-229ENST00000528672 IRF3Q14653 427 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 FBXO43Q4G163 708 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 GLE1Q53GS7 698 aaKnown RBP3.46□□□□□ -1.86
CD44-229ENST00000528672 ATG9BQ674R7 924 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 AADACL2Q6P093 401 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 C17orf99Q6UX52 265 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 OTUD6AQ7L8S5 288 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 GSTA5Q7RTV2 222 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 RNF144BQ7Z419 303 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 KDELC2Q7Z4H8 507 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 GRASPQ7Z6J2 395 aaPredicted RBP3.46□□□□□ -1.86
CD44-229ENST00000528672 LCA5Q86VQ0 697 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 CHSY1Q86X52 802 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 GALNT13Q8IUC8 556 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 ARHGAP12Q8IWW6 846 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 DNAJC10Q8IXB1 793 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 SCML4Q8N228 414 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 SETD9Q8NE22 299 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 DNAAF1Q8NEP3 725 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 GABPB2Q8TAK5 448 aaPredicted RBP3.46□□□□□ -1.86
CD44-229ENST00000528672 NEK9Q8TD19 979 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 DDB2Q92466 427 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 VMP1Q96GC9 406 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 HS6ST2Q96MM7 605 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 WDFY2Q96P53 400 aa3.46□□□□□ -1.86
CD44-229ENST00000528672 FYTTD1Q96QD9 318 aaKnown RBP3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms