RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 RFWD3Q6PCD5 774 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 PARM1Q6UWI2 310 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 VITQ6UXI7 678 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 MAATS1Q7Z4T9 603 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 CTAGE6Q86UF2 777 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 TMEM25Q86YD3 366 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 CCDC117Q8IWD4 279 aaPredicted RBP7.57□□□□□ -1.2
CD44-228ENST00000528455 CTAGE4Q8IX94 777 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 YAF2Q8IY57 180 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 CFAP52Q8N1V2 620 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 FBXL6Q8N531 539 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 PRELID2Q8N945 189 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 HJURPQ8NCD3 748 aaPredicted RBP7.57□□□□□ -1.2
CD44-228ENST00000528455 CCDC26Q8TAB7 109 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 DDI1Q8WTU0 396 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 ATP2A3Q93084 1043 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 FATE1Q969F0 183 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 NKD2Q969F2 451 aaPredicted RBP7.57□□□□□ -1.2
CD44-228ENST00000528455 HAUS1Q96CS2 278 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 CAPZA3Q96KX2 299 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 RUNDC3BQ96NL0 473 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 PRRX2Q99811 253 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 HERPUD2Q9BSE4 406 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 PLA2G2FQ9BZM2 168 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 KLC2Q9H0B6 622 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 MAGEH1Q9H213 219 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 TRPV5Q9NQA5 729 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 RRAGDQ9NQL2 400 aaPredicted RBP7.57□□□□□ -1.2
CD44-228ENST00000528455 ETNK2Q9NVF9 386 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 KLHL11Q9NVR0 708 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 MPP6Q9NZW5 540 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 KIAA1522Q9P206 1035 aaPredicted RBP7.57□□□□□ -1.2
CD44-228ENST00000528455 FAM8A1Q9UBU6 413 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 ZNF212Q9UDV6 495 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 PCYOX1Q9UHG3 505 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 FBXO10Q9UK96 956 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 NEU3Q9UQ49 428 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 SNX10Q9Y5X0 201 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 BCLAF3A2AJT9 711 aaKnown RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 ARHGAP42A6NI28 874 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 H0Y626 953 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 MTSS1O43312 755 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 TIMM44O43615 452 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 TSPAN3O60637 253 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 TBL1XO60907 577 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 CNTN5O94779 1100 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 NFATC1O95644 943 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 ITGAVP06756 1048 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 ASGR2P07307 311 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 RBP3P10745 1247 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 GSTT1P30711 240 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 ETFBP38117 255 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 COILP38432 576 aaPredicted RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 IFNAR2P48551 515 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 RPS24P62847 133 aaKnown RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 OTUD4Q01804 1114 aaKnown RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 TDGQ13569 410 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 RUNX3Q13761 415 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 BYSLQ13895 437 aaKnown RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 DMC1Q14565 340 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 POLD3Q15054 466 aaPredicted RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 NOMO1Q15155 1222 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 LLGL1Q15334 1064 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 DHCR24Q15392 516 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 PREPLQ4J6C6 727 aaPredicted RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 GLE1Q53GS7 698 aaKnown RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 RPS26P11Q5JNZ5 115 aaPredicted RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 LY6G5CQ5SRR4 150 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 KIAA0907Q7Z7F0 614 aaPredicted RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 SLC44A3Q8N4M1 653 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 MMGT1Q8N4V1 131 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 C12orf50Q8NA57 414 aaPredicted RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 RIN3Q8TB24 985 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 SLC35B2Q8TB61 432 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 ACTL9Q8TC94 416 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 FGF14Q92915 247 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 SLCO2A1Q92959 643 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 ARHGEF2Q92974 986 aaKnown RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 MAGOHBQ96A72 148 aaKnown RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 RSPRY1Q96DX4 576 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 MYEOVQ96EZ4 313 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 ASIC4Q96FT7 647 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 KLHDC7BQ96G42 594 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 XPO6Q96QU8 1125 aaKnown RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 FERMT1Q9BQL6 677 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 FEM1AQ9BSK4 669 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 BBS2Q9BXC9 721 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 AP1M1Q9BXS5 423 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 SLC39A8Q9C0K1 460 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 KCNK12Q9HB15 430 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 DTLQ9NZJ0 730 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 SAE1Q9UBE0 346 aaPredicted RBP7.56□□□□□ -1.2
CD44-228ENST00000528455 HEY1Q9Y5J3 304 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 MUC6Q6W4X9 2439 aa7.56□□□□□ -1.2
CD44-228ENST00000528455 TRDMT1O14717 391 aaKnown RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 PPP1R12AO14974 1030 aaPredicted RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 MCF2LO15068 1137 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 HOXC11O43248 304 aaPredicted RBP7.55□□□□□ -1.2
CD44-228ENST00000528455 KDELR3O43731 214 aa7.55□□□□□ -1.2
CD44-228ENST00000528455 LIASO43766 372 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms