RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 GRASPQ7Z6J2 395 aaPredicted RBP5.04□□□□□ -1.6
CD44-220ENST00000525688 PRRT2Q7Z6L0 340 aaPredicted RBP5.04□□□□□ -1.6
CD44-220ENST00000525688 ARMC8Q8IUR7 673 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 CCAR2Q8N163 923 aaKnown RBP5.04□□□□□ -1.6
CD44-220ENST00000525688 EXD3Q8N9H8 876 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 TDRD7Q8NHU6 1098 aaKnown RBP5.04□□□□□ -1.6
CD44-220ENST00000525688 ZCCHC10Q8TBK6 192 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 SPATA18Q8TC71 538 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 ANP32BQ92688 251 aaKnown RBP5.04□□□□□ -1.6
CD44-220ENST00000525688 P2RY11Q96G91 374 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 TIMP4Q99727 224 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 ZNF747Q9BV97 191 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 THAP1Q9NVV9 213 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 HAUS2Q9NVX0 235 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 TRMT1Q9NXH9 659 aaKnown RBP5.04□□□□□ -1.6
CD44-220ENST00000525688 RABL2AQ9UBK7 228 aaPredicted RBP5.04□□□□□ -1.6
CD44-220ENST00000525688 SUFUQ9UMX1 484 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 ST3GAL5Q9UNP4 418 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 ZNF711Q9Y462 761 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 SIRT4Q9Y6E7 314 aaPredicted RBP5.04□□□□□ -1.6
CD44-220ENST00000525688 NKTRP30414 1462 aaKnown RBP5.04□□□□□ -1.6
CD44-220ENST00000525688 PPLO60437 1756 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 METP08581 1390 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 TMEM94Q12767 1356 aa5.04□□□□□ -1.6
CD44-220ENST00000525688 ADGRF5Q8IZF2 1346 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 CHD2O14647 1828 aaKnown RBP5.03□□□□□ -1.6
CD44-220ENST00000525688 GOLGA6L10A0A0M3HER8 536 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 TCRBV5S1A1TA0A578 114 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 NPIPB13A6NJU9 1138 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 SH2D7A6NKC9 451 aaPredicted RBP5.03□□□□□ -1.6
CD44-220ENST00000525688 NPIPB5A8MRT5 1133 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 NPIPB4C9JG80 1138 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 GOSR1O95249 250 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 ADH4P08319 380 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 THEGLP0DJG4 465 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 KRT10P13645 584 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 IL11P20809 199 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 PRPH2P23942 346 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 GPD2P43304 727 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 EVCP57679 992 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 HOXA4Q00056 320 aaPredicted RBP5.03□□□□□ -1.6
CD44-220ENST00000525688 DMWDQ09019 674 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 ALKBH1Q13686 389 aaKnown RBP5.03□□□□□ -1.6
CD44-220ENST00000525688 CAMK1Q14012 370 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 ERV3-1Q14264 604 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 GLE1Q53GS7 698 aaKnown RBP5.03□□□□□ -1.6
CD44-220ENST00000525688 HECTD2Q5U5R9 776 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 IGFL4Q6B9Z1 124 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 NAPRTQ6XQN6 538 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 TRIM72Q6ZMU5 477 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 FAM47EQ6ZV65 393 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 ADGRF3Q8IZF5 1079 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 AVL9Q8NBF6 648 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 NSUN4Q96CB9 384 aaKnown RBP5.03□□□□□ -1.6
CD44-220ENST00000525688 DAZAP1Q96EP5 407 aaKnown RBP5.03□□□□□ -1.6
CD44-220ENST00000525688 APOPT1Q96IL0 206 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 ZNF341Q9BYN7 854 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 CLPBQ9H078 707 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 C2orf40Q9H1Z8 148 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 PPP1R14DQ9NXH3 145 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 MTF2Q9Y483 593 aaPredicted RBP5.03□□□□□ -1.6
CD44-220ENST00000525688 ALKQ9UM73 1620 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 PTPRUQ92729 1446 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 IFT172Q9UG01 1749 aa5.03□□□□□ -1.6
CD44-220ENST00000525688 NRXN1Q9ULB1 1477 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 NPIPB8E9PQR5 432 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 SLC7A4O43246 635 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 EXOC3O60645 756 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 RTN3O95197 1032 aaPredicted RBP5.02□□□□□ -1.61
CD44-220ENST00000525688 F9P00740 461 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 ADRB1P08588 477 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 WEE2P0C1S8 567 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 ARSAP15289 507 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 WT1P19544 449 aaPredicted RBP5.02□□□□□ -1.61
CD44-220ENST00000525688 ABCD3P28288 659 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 ATP5DP30049 168 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 AVPR2P30518 371 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 MCM7P33993 719 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 HNF4AP41235 474 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 RPS6KA3P51812 740 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 LIMK1P53667 647 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 UBXN1Q04323 297 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 KCNB1Q14721 858 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 TNIP1Q15025 636 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 RASA2Q15283 850 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 TAF7Q15545 349 aaPredicted RBP5.02□□□□□ -1.61
CD44-220ENST00000525688 ZKSCAN8Q15776 578 aaPredicted RBP5.02□□□□□ -1.61
CD44-220ENST00000525688 FAM153CQ494X1 144 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 KRTCAP3Q53RY4 240 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 RUNDC3AQ59EK9 446 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 INO80CQ6PI98 192 aaPredicted RBP5.02□□□□□ -1.61
CD44-220ENST00000525688 VSTM1Q6UX27 236 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 DCDC5Q6ZRR9 648 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 RAPH1Q70E73 1250 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 OTUD6AQ7L8S5 288 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 DNAJB7Q7Z6W7 309 aaPredicted RBP5.02□□□□□ -1.61
CD44-220ENST00000525688 RASAL3Q86YV0 1011 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 TRIML1Q8N9V2 468 aa5.02□□□□□ -1.61
CD44-220ENST00000525688 GOT1L1Q8NHS2 421 aaPredicted RBP5.02□□□□□ -1.61
CD44-220ENST00000525688 RUFY2Q8WXA3 655 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms