RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 GLB1LQ6UWU2 654 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 OTOP3Q7RTS5 596 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CUZD1Q86UP6 607 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CAND1Q86VP6 1230 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 HERC6Q8IVU3 1022 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 MICU2Q8IYU8 434 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CNTD1Q8N815 330 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 FAM156AQ8NDB6 213 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 SIGLEC10Q96LC7 697 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 BCO2Q9BYV7 579 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 ANAPC2Q9UJX6 822 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 DERAQ9Y315 318 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 PLCH1Q4KWH8 1693 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 ADM5C9JUS6 153 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 DPYSL4O14531 572 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 NRP2O60462 931 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 MAN1A2O60476 641 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 SYNCRIPO60506 623 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 MYO1DO94832 1006 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CHRNGP07510 517 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 COL6A2P12110 1019 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CCNG1P51959 295 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CDK18Q07002 472 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 TRAF2Q12933 501 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 DLG1Q12959 904 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 DPYSQ14117 519 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 PLEKHG4Q58EX7 1191 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 FRMD7Q6ZUT3 714 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 PQLC3Q8N755 202 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 TRPC4APQ8TEL6 797 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 LPGAT1Q92604 370 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 GAD1Q99259 594 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 LPIN3Q9BQK8 851 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 SEMA4BQ9NPR2 832 aaPredicted RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CYLDQ9NQC7 956 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 COMMD8Q9NX08 183 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 TMCO1Q9UM00 188 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 CCDC88AQ3V6T2 1871 aa8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 MYO5AQ9Y4I1 1855 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-216ENST00000512820 COL18A1P39060 1754 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 UBR2Q8IWV8 1755 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 DHRS12A0PJE2 317 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 TTLL13PA6NNM8 815 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 ABL2P42684 1182 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 TRPC1P48995 793 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 RPS6KA3P51812 740 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 CDH13P55290 713 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 GRIK3Q13003 919 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 ADGRE1Q14246 886 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 CCDC92Q53HC0 331 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 CACHD1Q5VU97 1274 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 UGT3A1Q6NUS8 523 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 POTEHQ6S545 545 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 PLEKHH3Q7Z736 793 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 DNAJB14Q8TBM8 379 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 FIG4Q92562 907 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 EIF2AQ9BY44 585 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 POLR1BQ9H9Y6 1135 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 GOLGA2P5Q9HBQ8 144 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 TAS2R13Q9NYV9 303 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 WWOXQ9NZC7 414 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 EGFL7Q9UHF1 273 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 TRAF6Q9Y4K3 522 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 LRP5O75197 1615 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 DOT1LQ8TEK3 1739 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 BUD23O43709 281 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 TSPAN1O60635 241 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 VPS4BO75351 444 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 TRMUO75648 421 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 POMCP01189 267 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 PTPN3P26045 913 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 IRF9Q00978 393 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 MBLAC2Q68D91 279 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 SLC9A4Q6AI14 798 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 OVOS1Q6IE37 1185 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 DEFB132Q7Z7B7 95 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 TMEM86AQ8N2M4 240 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 PHTF2Q8N3S3 785 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 ZNF512Q96ME7 567 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 FAM124BQ9H5Z6 455 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 ADARB2Q9NS39 739 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 GALNT8Q9NY28 637 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 FAM8A1Q9UBU6 413 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 POLG2Q9UHN1 485 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 FZD10Q9ULW2 581 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 SLC12A8A0AV02 714 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 EVPLLA8MZ36 301 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 FGF10O15520 208 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 RAMP2O60895 175 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 APOA1P02647 267 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 SERPINF2P08697 491 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 HIST1H2AGP0C0S8 130 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 HIST1H2ADP20671 130 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 NMBRP28336 390 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 AKT1P31749 480 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 CYP2C18P33260 490 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 TTKP33981 857 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 CD86P42081 329 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 FSTL1Q12841 308 aa8.49□□□□□ -1.05
LIMCH1-216ENST00000512820 SFT2D3Q587I9 215 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms