RNA–Protein interactions for RNA: ENST00000512431.5

DDX41-215, Transcript of DEAD-box helicase 41, human

TSL 5

Gene DDX41, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-215	ENST00000512431	TSG101	Q99816	390 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	HEPH	Q9BQS7	1158 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	LRRC61	Q9BV99	259 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	SIK2	Q9H0K1	926 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	EPN3	Q9H201	632 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	TCEAL2	Q9H3H9	227 aa	Predicted RBP	12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	LRRN3	Q9H3W5	708 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	LRRC4C	Q9HCJ2	640 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	SIRPG	Q9P1W8	387 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	ARMCX3	Q9UH62	379 aa	Predicted RBP	12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	MAN2B2	Q9Y2E5	1009 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	PAXBP1	Q9Y5B6	917 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431	HS3ST4	Q9Y661	456 aa		12.8	□□□□□ -0.36
DDX41-215	ENST00000512431		A0A1W2PQ27	194 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431		A0A1W2PQ64	194 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431		A0A1W2PQC6	194 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431		E5RJQ4	531 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	RNF103	O00237	685 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	TOR1B	O14657	336 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	CALCA	P01258	141 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	SYK	P43405	635 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	IRAK1	P51617	712 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	MAPK10	P53779	464 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	PITX1	P78337	314 aa	Predicted RBP	12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	FOXK1	P85037	733 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	DPYD	Q12882	1025 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	NME3	Q13232	169 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	KCNAB2	Q13303	367 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	NCAPH	Q15003	741 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	IGFBP7	Q16270	282 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	SKIDA1	Q1XH10	827 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	TPRG1L	Q5T0D9	272 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	RETSAT	Q6NUM9	610 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	TMEM110	Q86TL2	294 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	SETD3	Q86TU7	594 aa	Predicted RBP	12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	DEFB106A	Q8N104	65 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	DCAF4L2	Q8NA75	395 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	USP7	Q93009	1102 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	ARHGEF26	Q96DR7	871 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	PSMB7	Q99436	277 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	FUCA2	Q9BTY2	467 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	C1QTNF7	Q9BXJ2	289 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	SLC4A5	Q9BY07	1137 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	CLPB	Q9H078	707 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	AKAP7	Q9P0M2	348 aa	Predicted RBP	12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	ANAPC2	Q9UJX6	822 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	RCOR1	Q9UKL0	485 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	WASF2	Q9Y6W5	498 aa		12.79	□□□□□ -0.36
DDX41-215	ENST00000512431	ADCY5	O95622	1261 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	GLI1	P08151	1106 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	ZSCAN22	P10073	491 aa	Predicted RBP	12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	ITIH1	P19827	911 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	EIF4A3	P38919	411 aa	Known RBP	12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	CASR	P41180	1078 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	FKBP3	Q00688	224 aa	Known RBP	12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	SLC20A2	Q08357	652 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	C5orf22	Q49AR2	442 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	CARD16	Q5EG05	197 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	EFHC1	Q5JVL4	640 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	DENND1B	Q6P3S1	775 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	LRRC31	Q6UY01	552 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	MACC1	Q6ZN28	852 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	PARS2	Q7L3T8	475 aa	Known RBP	12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	GKN2	Q86XP6	184 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	PCDH20	Q8N6Y1	951 aa	Known RBP	12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	HTR3C	Q8WXA8	447 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	CEP44	Q9C0F1	390 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	METTL14	Q9HCE5	456 aa	Known RBP	12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	RABGEF1	Q9UJ41	708 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	TUBD1	Q9UJT1	453 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431	GPR34	Q9UPC5	381 aa		12.78	□□□□□ -0.36
DDX41-215	ENST00000512431		A0A1W2PQM1	296 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	AGRP	O00253	132 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	PAGE1	O75459	146 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	CNTN5	O94779	1100 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	F13A1	P00488	732 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	KRT5	P13647	590 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	WT1	P19544	449 aa	Predicted RBP	12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	OR1E1	P30953	314 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	GGCX	P38435	758 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	CCR10	P46092	362 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	FMO5	P49326	533 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	ATP1A2	P50993	1020 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	CCNH	P51946	323 aa	Predicted RBP	12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	POLE2	P56282	527 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	TAF5	Q15542	800 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	MEA1	Q16626	185 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	RRAGA	Q7L523	313 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	VPS36	Q86VN1	386 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	DTX1	Q86Y01	620 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	CCNJL	Q8IV13	435 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	RYBP	Q8N488	228 aa	Predicted RBP	12.77	□□□□□ -0.37
DDX41-215	ENST00000512431		Q8N9G6	341 aa	Predicted RBP	12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	KY	Q8NBH2	561 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	PCDH19	Q8TAB3	1148 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	KAT5	Q92993	513 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	SLC35C1	Q96A29	364 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	CENPT	Q96BT3	561 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	CCDC34	Q96HJ3	373 aa		12.77	□□□□□ -0.37
DDX41-215	ENST00000512431	SPON2	Q9BUD6	331 aa		12.77	□□□□□ -0.37

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