RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TRMT13Q9NUP7 481 aaKnown RBP12.14□□□□□ -0.47
NUP54-202ENST00000502850 TMEM248Q9NWD8 314 aa12.14□□□□□ -0.47
NUP54-202ENST00000502850 OSER1Q9NX31 292 aa12.14□□□□□ -0.47
NUP54-202ENST00000502850 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.14□□□□□ -0.47
NUP54-202ENST00000502850 STX18Q9P2W9 335 aaKnown RBP12.14□□□□□ -0.47
NUP54-202ENST00000502850 ZNF212Q9UDV6 495 aa12.14□□□□□ -0.47
NUP54-202ENST00000502850 DNAJB4Q9UDY4 337 aa12.14□□□□□ -0.47
NUP54-202ENST00000502850 ACOT9Q9Y305 439 aa12.14□□□□□ -0.47
NUP54-202ENST00000502850 RAP2CQ9Y3L5 183 aa12.14□□□□□ -0.47
NUP54-202ENST00000502850 DOCK4Q8N1I0 1966 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 LIN7AO14910 233 aaPredicted RBP12.13□□□□□ -0.47
NUP54-202ENST00000502850 TADA2AO75478 443 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 MOCS2O96007 188 aaPredicted RBP12.13□□□□□ -0.47
NUP54-202ENST00000502850 GM2AP17900 193 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 CLNS1AP54105 237 aaKnown RBP12.13□□□□□ -0.47
NUP54-202ENST00000502850 POU4F1Q01851 419 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 KDSRQ06136 332 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 SLC34A1Q06495 639 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 PRKAA1Q13131 559 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 POU6F1Q14863 301 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 KPNB1Q14974 876 aaKnown RBP12.13□□□□□ -0.47
NUP54-202ENST00000502850 TRIP4Q15650 581 aaPredicted RBP12.13□□□□□ -0.47
NUP54-202ENST00000502850 RFWD3Q6PCD5 774 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 TDRD5Q8NAT2 981 aaKnown RBP12.13□□□□□ -0.47
NUP54-202ENST00000502850 C2CD4AQ8NCU7 369 aaPredicted RBP12.13□□□□□ -0.47
NUP54-202ENST00000502850 SPATA22Q8NHS9 363 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 TTC8Q8TAM2 541 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 C2orf15Q8WU43 125 aaKnown RBP12.13□□□□□ -0.47
NUP54-202ENST00000502850 PDCD6IPQ8WUM4 868 aaKnown RBP12.13□□□□□ -0.47
NUP54-202ENST00000502850 CCDC126Q96EE4 140 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 BTN2A3PQ96KV6 586 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 CDK5RAP1Q96SZ6 601 aaKnown RBP12.13□□□□□ -0.47
NUP54-202ENST00000502850 SEZ6LQ9BYH1 1024 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 DRC3Q9H069 523 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 RETREG1Q9H6L5 497 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 ELAC1Q9H777 363 aaKnown RBP12.13□□□□□ -0.47
NUP54-202ENST00000502850 SP110Q9HB58 689 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 NMUR1Q9HB89 426 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 GPAMQ9HCL2 828 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 PRDM5Q9NQX1 630 aaPredicted RBP12.13□□□□□ -0.47
NUP54-202ENST00000502850 TREX1Q9NSU2 369 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 TMEM161AQ9NX61 479 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 IL37Q9NZH6 218 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 NKX1-2Q9UD57 310 aaPredicted RBP12.13□□□□□ -0.47
NUP54-202ENST00000502850 PLA2G4CQ9UP65 541 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 LRRC42Q9Y546 428 aa12.13□□□□□ -0.47
NUP54-202ENST00000502850 MYLKQ15746 1914 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 FAM95CA0A1B0GW59 222 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 FAM92AA1XBS5 289 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 FKBP6O75344 327 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 VAPBO95292 243 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 MT-CYBP00156 380 aaPredicted RBP12.12□□□□□ -0.47
NUP54-202ENST00000502850 ACADSP16219 412 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 YWHAQP27348 245 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 ADSLP30566 484 aaPredicted RBP12.12□□□□□ -0.47
NUP54-202ENST00000502850 ARCN1P48444 511 aaKnown RBP12.12□□□□□ -0.47
NUP54-202ENST00000502850 PTDSS1P48651 473 aaKnown RBP12.12□□□□□ -0.47
NUP54-202ENST00000502850 CLCN5P51795 746 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 ELAVL2Q12926 359 aaKnown RBP12.12□□□□□ -0.47
NUP54-202ENST00000502850 UBAP2LQ14157 1087 aaKnown RBP12.12□□□□□ -0.47
NUP54-202ENST00000502850 RCN1Q15293 331 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 MUM1Q2TAK8 710 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 PARP15Q460N3 678 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 ACSBG2Q5FVE4 666 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 HABP4Q5JVS0 413 aaKnown RBP12.12□□□□□ -0.47
NUP54-202ENST00000502850 VARS2Q5ST30 1063 aaKnown RBP12.12□□□□□ -0.47
NUP54-202ENST00000502850 MARC1Q5VT66 337 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 DENND5AQ6IQ26 1287 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 EPGNQ6UW88 154 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 RANBP10Q6VN20 620 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 ARHGAP36Q6ZRI8 547 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 ULK2Q8IYT8 1036 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 ABI1Q8IZP0 508 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 PLD6Q8N2A8 252 aaKnown RBP12.12□□□□□ -0.47
NUP54-202ENST00000502850 AFAP1L2Q8N4X5 818 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 SPPL2BQ8TCT7 592 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 STYXQ8WUJ0 223 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 JADE3Q92613 823 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 AZIN2Q96A70 460 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 IMP4Q96G21 291 aaKnown RBP12.12□□□□□ -0.47
NUP54-202ENST00000502850 NAF1Q96HR8 494 aaKnown RBP12.12□□□□□ -0.47
NUP54-202ENST00000502850 SCYL1Q96KG9 808 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 C1QTNF1Q9BXJ1 281 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 CAB39LQ9H9S4 337 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 TLR8Q9NR97 1041 aaKnown RBP12.12□□□□□ -0.47
NUP54-202ENST00000502850 PNPOQ9NVS9 261 aa12.12□□□□□ -0.47
NUP54-202ENST00000502850 MAGED2Q9UNF1 606 aaPredicted RBP12.12□□□□□ -0.47
NUP54-202ENST00000502850 IGLV3-10A0A075B6K4 115 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 H0Y3Z8 333 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 ZNF195O14628 629 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 HDAC3O15379 428 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 HOXA2O43364 376 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 NPHS1O60500 1241 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 PMPCBO75439 489 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 RPSAP08865 295 aaKnown RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 SLC35E2BP0CK96 405 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 HOXB8P17481 243 aaPredicted RBP12.11□□□□□ -0.47
NUP54-202ENST00000502850 ATP6V1C1P21283 382 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 CPA2P48052 419 aa12.11□□□□□ -0.47
NUP54-202ENST00000502850 MAPKAPK2P49137 400 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms