RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 HEPHQ9BQS7 1158 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 AIFM2Q9BRQ8 373 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 TMEM175Q9BSA9 504 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 NUSAP1Q9BXS6 441 aaKnown RBP4.29□□□□□ -1.72
USP54-217ENST00000498213 RSAD1Q9HA92 442 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 LY9Q9HBG7 655 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 VAT1LQ9HCJ6 419 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 RIC8AQ9NPQ8 531 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 NRBP2Q9NSY0 501 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 TUBD1Q9UJT1 453 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 TLK1Q9UKI8 766 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 SLC8A2Q9UPR5 921 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 PCDHA10Q9Y5I2 948 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 F8P00451 2351 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 PLXNB3Q9ULL4 1909 aa4.29□□□□□ -1.72
USP54-217ENST00000498213 ATXN2Q99700 1313 aaKnown RBP4.28□□□□□ -1.72
USP54-217ENST00000498213 CENPEQ02224 2701 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 GOLGA4Q13439 2230 aaKnown RBP4.28□□□□□ -1.72
USP54-217ENST00000498213 CCDC154A6NI56 674 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 CCDC69A6NI79 296 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 PLK4O00444 970 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 CCL16O15467 120 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 SGTAO43765 313 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 ECI2O75521 394 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 AGFG2O95081 481 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 CD1AP06126 327 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 GALTP07902 379 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 CYP21A2P08686 494 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 SFPQP23246 707 aaKnown RBP eCLIP4.28□□□□□ -1.72
USP54-217ENST00000498213 KLRC1P26715 233 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 SLC11A1P49279 550 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 CDKN1CP49918 316 aaPredicted RBP4.28□□□□□ -1.72
USP54-217ENST00000498213 JAK3P52333 1124 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 ACTR2P61160 394 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 RHDQ02161 417 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 POU5F1BQ06416 359 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 CCDC173Q0VFZ6 552 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 FOXI1Q12951 378 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 TARDBPQ13148 414 aaKnown RBP eCLIP4.28□□□□□ -1.72
USP54-217ENST00000498213 RAB39AQ14964 217 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 PLCB4Q15147 1175 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 MAPK6Q16659 721 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 CYP2A13Q16696 494 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 ARHGAP40Q5TG30 622 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 KIAA0319LQ8IZA0 1049 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 CBARPQ8N350 705 aaPredicted RBP4.28□□□□□ -1.72
USP54-217ENST00000498213 FANCBQ8NB91 859 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 CCDC148Q8NFR7 591 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 IL31RAQ8NI17 732 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 ACTRT2Q8TDY3 377 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 TRAPPC12Q8WVT3 735 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 TMEM125Q96AQ2 219 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 CLPTM1LQ96KA5 538 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 TEKT5Q96M29 485 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 RPS6KC1Q96S38 1066 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 DUSP26Q9BV47 211 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 TRMT61BQ9BVS5 477 aaKnown RBP4.28□□□□□ -1.72
USP54-217ENST00000498213 PLEKHA4Q9H4M7 779 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 CPNE5Q9HCH3 593 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 ZNF334Q9HCZ1 680 aaPredicted RBP4.28□□□□□ -1.72
USP54-217ENST00000498213 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.28□□□□□ -1.72
USP54-217ENST00000498213 TMEM74BQ9NUR3 256 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 HCFC1R1Q9NWW0 138 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 BARHL2Q9NY43 387 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 DNAJB4Q9UDY4 337 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.28□□□□□ -1.72
USP54-217ENST00000498213 PCDHA6Q9UN73 950 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 LRBAP50851 2863 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 MYH15Q9Y2K3 1946 aa4.28□□□□□ -1.72
USP54-217ENST00000498213 SPTBN1Q01082 2364 aaKnown RBP4.28□□□□□ -1.72
USP54-217ENST00000498213 ABCA2Q9BZC7 2435 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 FNDC1Q4ZHG4 1894 aaPredicted RBP4.27□□□□□ -1.73
USP54-217ENST00000498213 SLC38A8A6NNN8 435 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 E7EWF7 191 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 IPO5O00410 1097 aaKnown RBP4.27□□□□□ -1.73
USP54-217ENST00000498213 TOR1BO14657 336 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 ASAP2O43150 1006 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 HTRA2O43464 458 aaPredicted RBP4.27□□□□□ -1.73
USP54-217ENST00000498213 PEX1O43933 1283 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 EIF5BO60841 1220 aaKnown RBP4.27□□□□□ -1.73
USP54-217ENST00000498213 DIAPH2O60879 1101 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 C22orf31O95567 290 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 URODP06132 367 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 HLA-EP13747 358 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 TYRP1P17643 537 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 RPL17P18621 184 aaKnown RBP4.27□□□□□ -1.73
USP54-217ENST00000498213 BCKDHBP21953 392 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 TNFRSF8P28908 595 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 AXLP30530 894 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 HOXA9P31269 272 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 TLE3Q04726 772 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 PIGFQ07326 219 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 NCBP1Q09161 790 aaKnown RBP4.27□□□□□ -1.73
USP54-217ENST00000498213 IL10RAQ13651 578 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 HNRNPDQ14103 355 aaKnown RBP4.27□□□□□ -1.73
USP54-217ENST00000498213 PON2Q15165 354 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 INAVAQ3KP66 663 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 C20orf194Q5TEA3 1177 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 TMTC3Q6ZXV5 915 aa4.27□□□□□ -1.73
USP54-217ENST00000498213 RD3Q7Z3Z2 195 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms