RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.28□□□□□ -1.4
BRCA1-224ENST00000497488 NT5C3AQ9H0P0 336 aa6.28□□□□□ -1.4
BRCA1-224ENST00000497488 XYLT2Q9H1B5 865 aa6.28□□□□□ -1.4
BRCA1-224ENST00000497488 ABCG8Q9H221 673 aa6.28□□□□□ -1.4
BRCA1-224ENST00000497488 HRH4Q9H3N8 390 aa6.28□□□□□ -1.4
BRCA1-224ENST00000497488 MAGEE1Q9HCI5 957 aa6.28□□□□□ -1.4
BRCA1-224ENST00000497488 PSD3Q9NYI0 1048 aa6.28□□□□□ -1.4
BRCA1-224ENST00000497488 CNIH4Q9P003 139 aa6.28□□□□□ -1.4
BRCA1-224ENST00000497488 DLGAP2Q9P1A6 1054 aa6.28□□□□□ -1.4
BRCA1-224ENST00000497488 LEF1Q9UJU2 399 aaPredicted RBP6.28□□□□□ -1.4
BRCA1-224ENST00000497488 CDH7Q9ULB5 785 aa6.28□□□□□ -1.4
BRCA1-224ENST00000497488 YBX2Q9Y2T7 364 aaKnown RBP6.28□□□□□ -1.4
BRCA1-224ENST00000497488 LIPGQ9Y5X9 500 aa6.28□□□□□ -1.4
BRCA1-224ENST00000497488 CCDC195A0A1B0GUA6 201 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 CCDC188H7C350 402 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 ZNF213O14771 459 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 SPRY1O43609 319 aaPredicted RBP6.27□□□□□ -1.41
BRCA1-224ENST00000497488 PRICKLE3O43900 615 aaPredicted RBP6.27□□□□□ -1.41
BRCA1-224ENST00000497488 CEP104O60308 925 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 MITFO75030 526 aaPredicted RBP6.27□□□□□ -1.41
BRCA1-224ENST00000497488 REC8O95072 547 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 KAT7O95251 611 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 ONECUT2O95948 504 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 IGHA1P01876 353 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 SPATA31D3P0C874 917 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 CD8BP10966 210 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 CD19P15391 556 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 FERP16591 822 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 CCNA2P20248 432 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 MMP8P22894 467 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 PON1P27169 355 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 MC3RP41968 323 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 TAP1Q03518 808 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 ALKBH1Q13686 389 aaKnown RBP6.27□□□□□ -1.41
BRCA1-224ENST00000497488 RUNX2Q13950 521 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 AP5B1Q2VPB7 878 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 MYLK3Q32MK0 819 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 ZSCAN23Q3MJ62 389 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 GRHL2Q6ISB3 625 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 TRMT10BQ6PF06 316 aaKnown RBP6.27□□□□□ -1.41
BRCA1-224ENST00000497488 SPATA31D4Q6ZUB0 917 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 CAMKMTQ7Z624 323 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 RALYLQ86SE5 291 aaKnown RBP6.27□□□□□ -1.41
BRCA1-224ENST00000497488 ADCK1Q86TW2 530 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 XYLT1Q86Y38 959 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 MB21D1Q8N884 522 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 CNNM3Q8NE01 707 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 DENND6BQ8NEG7 585 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 MYLIPQ8WY64 445 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 TFAP2CQ92754 450 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 ELMOD3Q96FG2 381 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 PRR11Q96HE9 360 aaPredicted RBP6.27□□□□□ -1.41
BRCA1-224ENST00000497488 CFAP53Q96M91 514 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 OR2A14Q96R47 310 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 TRIM7Q9C029 511 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 PLK3Q9H4B4 646 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 PRDM7Q9NQW5 492 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 GDE1Q9NZC3 331 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 ABI3Q9P2A4 366 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 EXTL2Q9UBQ6 330 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 ARMCX3Q9UH62 379 aaPredicted RBP6.27□□□□□ -1.41
BRCA1-224ENST00000497488 CTNNA3Q9UI47 895 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 HAO1Q9UJM8 370 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 SSX2IPQ9Y2D8 614 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 KDM6BO15054 1643 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 LRRIQ1Q96JM4 1722 aa6.27□□□□□ -1.41
BRCA1-224ENST00000497488 PCF11O94913 1555 aaKnown RBP6.27□□□□□ -1.41
BRCA1-224ENST00000497488 CLIP1P30622 1438 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 FMN1Q68DA7 1419 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 CD109Q6YHK3 1445 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 HECW1Q76N89 1606 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 C3orf70A6NLC5 250 aaPredicted RBP6.26□□□□□ -1.41
BRCA1-224ENST00000497488 KIAA1324LA8MWY0 1029 aaPredicted RBP6.26□□□□□ -1.41
BRCA1-224ENST00000497488 ZNF185O15231 689 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 HOXA3O43365 443 aaPredicted RBP6.26□□□□□ -1.41
BRCA1-224ENST00000497488 VEGFDO43915 354 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 IGLV1-40P01703 118 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 ZFYP08048 801 aaPredicted RBP6.26□□□□□ -1.41
BRCA1-224ENST00000497488 SRPRAP08240 638 aaKnown RBP6.26□□□□□ -1.41
BRCA1-224ENST00000497488 SFTPCP11686 197 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 CYP4B1P13584 511 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 CD72P21854 359 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 PRPH2P23942 346 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 GDNFP39905 211 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 RABIFP47224 123 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 CLK3P49761 638 aaKnown RBP6.26□□□□□ -1.41
BRCA1-224ENST00000497488 F2RL1P55085 397 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 STX1BP61266 288 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 HGFACQ04756 655 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 RALGDSQ12967 914 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 RRP1BQ14684 758 aaKnown RBP6.26□□□□□ -1.41
BRCA1-224ENST00000497488 TBR1Q16650 682 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 FAM187BQ17R55 369 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 FAM214AQ32MH5 1076 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 NFXL1Q6ZNB6 911 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 CFAP77Q6ZQR2 320 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 ADGRE4PQ86SQ3 457 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 TADA2BQ86TJ2 420 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 AACSQ86V21 672 aa6.26□□□□□ -1.41
BRCA1-224ENST00000497488 IQCHQ86VS3 1027 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms