RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 ANKRD20A1Q5TYW2 823 aa15.98■□□□□ 0.15
HPS4-216ENST00000493455 ANKRD20A3Q5VUR7 823 aa15.98■□□□□ 0.15
HPS4-216ENST00000493455 ARHGEF18Q6ZSZ5 1173 aa15.98■□□□□ 0.15
HPS4-216ENST00000493455 SRLQ86TD4 932 aa15.98■□□□□ 0.15
HPS4-216ENST00000493455 OR2A12Q8NGT7 310 aa15.98■□□□□ 0.15
HPS4-216ENST00000493455 HMGB4Q8WW32 186 aa15.98■□□□□ 0.15
HPS4-216ENST00000493455 NKD2Q969F2 451 aaPredicted RBP15.98■□□□□ 0.15
HPS4-216ENST00000493455 PSKH2Q96QS6 385 aa15.98■□□□□ 0.15
HPS4-216ENST00000493455 SEMA3CQ99985 751 aa15.98■□□□□ 0.15
HPS4-216ENST00000493455 POLR1EQ9GZS1 481 aaKnown RBP15.98■□□□□ 0.15
HPS4-216ENST00000493455 POLMQ9NP87 494 aaPredicted RBP15.98■□□□□ 0.15
HPS4-216ENST00000493455 HAUS2Q9NVX0 235 aa15.98■□□□□ 0.15
HPS4-216ENST00000493455 CHURC1-FNTBB4DL54 471 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 PIGNO95427 931 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 IL1BP01584 269 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 ITGAVP06756 1048 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 ZSCAN5DPP0CG00 497 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 CHRNA3P32297 505 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 HSPA9P38646 679 aaKnown RBP15.97■□□□□ 0.15
HPS4-216ENST00000493455 RPS9P46781 194 aaKnown RBP15.97■□□□□ 0.15
HPS4-216ENST00000493455 VPS41P49754 854 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 SATB1Q01826 763 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 RAD51Q06609 339 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 ENPP2Q13822 863 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 CRY1Q16526 586 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 FAXCQ5TGI0 409 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 KIAA1324Q6UXG2 1013 aaKnown RBP15.97■□□□□ 0.15
HPS4-216ENST00000493455 MMAAQ8IVH4 418 aaKnown RBP15.97■□□□□ 0.15
HPS4-216ENST00000493455 SPEM1Q8N4L4 309 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 FBXL6Q8N531 539 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 TEX26Q8N6G2 289 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 CNTD1Q8N815 330 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 TMEM105Q8N8V8 129 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 C12orf50Q8NA57 414 aaPredicted RBP15.97■□□□□ 0.15
HPS4-216ENST00000493455 TSTD1Q8NFU3 115 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 ISG20Q96AZ6 181 aaKnown RBP15.97■□□□□ 0.15
HPS4-216ENST00000493455 KRT12Q99456 494 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 HEPHQ9BQS7 1158 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 USP29Q9HBJ7 922 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 GLOD4Q9HC38 313 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 UBP1Q9NZI7 540 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 IL36AQ9UHA7 158 aa15.97■□□□□ 0.15
HPS4-216ENST00000493455 TTC28Q96AY4 2481 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 CXorf51AA0A1B0GTR3 108 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 A0A1W2PQF6 199 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 TARSL2A2RTX5 802 aaKnown RBP15.96■□□□□ 0.15
HPS4-216ENST00000493455 CCDC188H7C350 402 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 KPNA3O00505 521 aaPredicted RBP15.96■□□□□ 0.15
HPS4-216ENST00000493455 RNASEH1O60930 286 aaKnown RBP15.96■□□□□ 0.15
HPS4-216ENST00000493455 LEFTY1O75610 366 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 UGT2B4P06133 528 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 PSMB4P28070 264 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 CD86P42081 329 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 PXNP49023 591 aaPredicted RBP15.96■□□□□ 0.15
HPS4-216ENST00000493455 VASPP50552 380 aaPredicted RBP15.96■□□□□ 0.15
HPS4-216ENST00000493455 CLCN5P51795 746 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 MRPS25P82663 173 aaKnown RBP15.96■□□□□ 0.15
HPS4-216ENST00000493455 CAMK2GQ13555 558 aaPredicted RBP15.96■□□□□ 0.15
HPS4-216ENST00000493455 PPP1R7Q15435 360 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 PCSK7Q16549 785 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 CYP1B1Q16678 543 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 MYLK3Q32MK0 819 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 ARSIQ5FYB1 569 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 SYCP2LQ5T4T6 812 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 ITPRIPL1Q6GPH6 555 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 ANO7Q6IWH7 933 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 DRICH1Q6PGQ1 229 aaPredicted RBP15.96■□□□□ 0.15
HPS4-216ENST00000493455 SYT13Q7L8C5 426 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 GLIS1Q8NBF1 620 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 SPATA4Q8NEY3 305 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 OR2T3Q8NH03 318 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 ATL2Q8NHH9 583 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 GANCQ8TET4 914 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 PDCD6IPQ8WUM4 868 aaKnown RBP15.96■□□□□ 0.15
HPS4-216ENST00000493455 FATE1Q969F0 183 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 TEKT5Q96M29 485 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 SPATA13Q96N96 652 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 RBM15Q96T37 977 aaKnown RBP eCLIP15.96■□□□□ 0.15
HPS4-216ENST00000493455 VAT1Q99536 393 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 MGME1Q9BQP7 344 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 NOD2Q9HC29 1040 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 DRG1Q9Y295 367 aaKnown RBP15.96■□□□□ 0.15
HPS4-216ENST00000493455 ATP8A1Q9Y2Q0 1164 aa15.96■□□□□ 0.15
HPS4-216ENST00000493455 PLK4O00444 970 aa15.95■□□□□ 0.14
HPS4-216ENST00000493455 ECEL1O95672 775 aa15.95■□□□□ 0.14
HPS4-216ENST00000493455 POP4O95707 220 aaKnown RBP15.95■□□□□ 0.14
HPS4-216ENST00000493455 KRT14P02533 472 aa15.95■□□□□ 0.14
HPS4-216ENST00000493455 CTSLP07711 333 aa15.95■□□□□ 0.14
HPS4-216ENST00000493455 STIP1P31948 543 aaKnown RBP15.95■□□□□ 0.14
HPS4-216ENST00000493455 CD68P34810 354 aaPredicted RBP15.95■□□□□ 0.14
HPS4-216ENST00000493455 MAGEA9P43362 315 aa15.95■□□□□ 0.14
HPS4-216ENST00000493455 CXCL12P48061 93 aa15.95■□□□□ 0.14
HPS4-216ENST00000493455 FNTAP49354 379 aa15.95■□□□□ 0.14
HPS4-216ENST00000493455 DGKEP52429 567 aa15.95■□□□□ 0.14
HPS4-216ENST00000493455 LMNB2Q03252 620 aa15.95■□□□□ 0.14
HPS4-216ENST00000493455 NIPAL4Q0D2K0 466 aa15.95■□□□□ 0.14
HPS4-216ENST00000493455 TUBB2AQ13885 445 aa15.95■□□□□ 0.14
HPS4-216ENST00000493455 ELAVL3Q14576 367 aaKnown RBP15.95■□□□□ 0.14
HPS4-216ENST00000493455 CFAP58Q5T655 872 aa15.95■□□□□ 0.14
HPS4-216ENST00000493455 ZNF776Q68DI1 518 aaPredicted RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms