RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ZFP69BQ9UJL9 534 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 MYO9BQ13459 2157 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 CHD5Q8TDI0 1954 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 LOC285095A0A1B0GVY8 99 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 SLC38A8A6NNN8 435 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 CAPN14A8MX76 684 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 GRXCR1A8MXD5 290 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 TMEM114B3SHH9 223 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 F5H423 210 aaPredicted RBP10.88□□□□□ -0.67
USP4-214ENST00000491791 ATP9BO43861 1147 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 CCDC22O60826 627 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 ABLIM3O94929 683 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 SNUPNO95149 360 aaKnown RBP10.88□□□□□ -0.67
USP4-214ENST00000491791 ATP6V1G2O95670 118 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 MYL2P10916 166 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 NEFHP12036 1026 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 PAMP19021 973 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 ARNTP27540 789 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 PBX2P40425 430 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 PBX3P40426 434 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 HK2P52789 917 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 KCNJ2P63252 427 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 ACVR1Q04771 509 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 OLIG2Q13516 323 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 SERINC3Q13530 473 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 LAMB3Q13751 1172 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 SNCBQ16143 134 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 TCTN1Q2MV58 587 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 USP41Q3LFD5 358 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 SWT1Q5T5J6 900 aaKnown RBP10.88□□□□□ -0.67
USP4-214ENST00000491791 TPGS2Q68CL5 300 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 FBXL22Q6P050 247 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 RNF19BQ6ZMZ0 732 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 C16orf59Q7L2K0 433 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 TBC1D1Q86TI0 1168 aaPredicted RBP10.88□□□□□ -0.67
USP4-214ENST00000491791 TMEM151AQ8N4L1 468 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 C2CD4AQ8NCU7 369 aaPredicted RBP10.88□□□□□ -0.67
USP4-214ENST00000491791 SPATA22Q8NHS9 363 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 ARRDC2Q8TBH0 407 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 PIWIL2Q8TC59 973 aaKnown RBP10.88□□□□□ -0.67
USP4-214ENST00000491791 TRMT2BQ96GJ1 504 aaKnown RBP10.88□□□□□ -0.67
USP4-214ENST00000491791 AGAP2Q99490 1192 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 FAM167BQ9BTA0 163 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 C1QTNF1Q9BXJ1 281 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 CWH43Q9H720 699 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 ALG13Q9NP73 1137 aaKnown RBP10.88□□□□□ -0.67
USP4-214ENST00000491791 C20orf96Q9NUD7 363 aaPredicted RBP10.88□□□□□ -0.67
USP4-214ENST00000491791 MPP6Q9NZW5 540 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 TMEM216Q9P0N5 145 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 THEGQ9P2T0 379 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 HEY2Q9UBP5 337 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 AFF4Q9UHB7 1163 aaKnown RBP10.88□□□□□ -0.67
USP4-214ENST00000491791 GGT7Q9UJ14 662 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 HAO1Q9UJM8 370 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 NUMBLQ9Y6R0 609 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 SHROOM3Q8TF72 1996 aa10.88□□□□□ -0.67
USP4-214ENST00000491791 A0A096LPK6 155 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 A0A0G2JND7 137 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 HEATR9A2RTY3 570 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 MROH6A6NGR9 719 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 TARM1B6A8C7 271 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 G3V2L1 256 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 PRAMEF11O60813 436 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 HAUS5O94927 633 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 MT-CYBP00156 380 aaPredicted RBP10.87□□□□□ -0.67
USP4-214ENST00000491791 C2P06681 752 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 SERPINA6P08185 405 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 MMP2P08253 660 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 CPB1P15086 417 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 CPA3P15088 417 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 CALB2P22676 271 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 IGFBP4P22692 258 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 CES1P23141 567 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 GABRB3P28472 473 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 CRABP2P29373 138 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 SLC8A1P32418 973 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 RFC2P35250 354 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 PPP3CCP48454 512 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 WNT3AP56704 352 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 EFEMP1Q12805 493 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 OVGP1Q12889 678 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 ALFQ53S48 1182 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 TAF1BQ53T94 588 aaPredicted RBP10.87□□□□□ -0.67
USP4-214ENST00000491791 C10orf120Q5SQS8 335 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 MARC1Q5VT66 337 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 SDHAF4Q5VUM1 108 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 CES3Q6UWW8 571 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 TTC9BQ8N6N2 239 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 GABPB2Q8TAK5 448 aaPredicted RBP10.87□□□□□ -0.67
USP4-214ENST00000491791 CALML6Q8TD86 181 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 NSMCE1Q8WV22 266 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 IGSF8Q969P0 613 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 UTP4Q969X6 686 aaKnown RBP10.87□□□□□ -0.67
USP4-214ENST00000491791 HMCESQ96FZ2 354 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 NSL1Q96IY1 281 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 MECRQ9BV79 373 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 FICDQ9BVA6 458 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 MAGEH1Q9H213 219 aa10.87□□□□□ -0.67
USP4-214ENST00000491791 MMADHCQ9H3L0 296 aaPredicted RBP10.87□□□□□ -0.67
USP4-214ENST00000491791 PIH1D1Q9NWS0 290 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms