RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 LEXMQ3ZCV2 418 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 GALNTL6Q49A17 601 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 C5orf22Q49AR2 442 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 ENTPD8Q5MY95 495 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 TTC22Q5TAA0 569 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 TMEM268Q5VZI3 342 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 PDXDC1Q6P996 788 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 AAGABQ6PD74 315 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 PARM1Q6UWI2 310 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 SYT13Q7L8C5 426 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 CERS3Q8IU89 383 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 ZDHHC17Q8IUH5 632 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 FAM217AQ8IXS0 508 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 CACNA2D3Q8IZS8 1091 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 MYCT1Q8N699 235 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 ANKRD44Q8N8A2 993 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 SLC2A12Q8TD20 617 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 OTUD7AQ8TE49 926 aaPredicted RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 WIPF2Q8TF74 440 aaPredicted RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 TRAPPC12Q8WVT3 735 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 KAT2AQ92830 837 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 PSMD1Q99460 953 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 C1QTNF1Q9BXJ1 281 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 CADM1Q9BY67 442 aaKnown RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 CLPBQ9H078 707 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 XRN2Q9H0D6 950 aaKnown RBP eCLIP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 ISCUQ9H1K1 167 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 MAGEH1Q9H213 219 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 MRPL44Q9H9J2 332 aaKnown RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 TXNRD2Q9NNW7 524 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 KRCC1Q9NPI7 259 aaPredicted RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 PNRC2Q9NPJ4 139 aaKnown RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 ZBTB40Q9NUA8 1239 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 TMEM51Q9NW97 253 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 NCKIPSDQ9NZQ3 722 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 KCND3Q9UK17 655 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 RAP2CQ9Y3L5 183 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 PKP3Q9Y446 797 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 ATP7BP35670 1465 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 CCDC18Q5T9S5 1454 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 COL24A1Q17RW2 1714 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 FMN2Q9NZ56 1722 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 PARP4Q9UKK3 1724 aaKnown RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 UNC79Q9P2D8 2635 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 PAPPAQ13219 1627 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 NRXN3Q9Y4C0 1643 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 SPATA31E1Q6ZUB1 1445 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 PIK3C2AO00443 1686 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 TRIOBPQ9H2D6 2365 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 CDC42BPAQ5VT25 1732 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 XRN1Q8IZH2 1706 aaKnown RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 IGKV2D-30A0A075B6S6 120 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 FAM90A8PA6NJQ4 464 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 LACTBL1A8MY62 500 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 CLGNO14967 610 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 IRAK2O43187 625 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 NEURL1O76050 574 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 TMCC1O94876 653 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 LDHAP00338 332 aaKnown RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 IFNA2P01563 188 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 WNT1P04628 370 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 ALPLP05186 524 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 FAM90A13PP0C7W8 464 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 FAM90A24PP0C7X0 464 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 CPA1P15085 419 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 DPEP1P16444 411 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 PTMSP20962 102 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 PRPH2P23942 346 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 CST5P28325 142 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 FOXG1P55316 489 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 IRX3P78415 501 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 RAPGEF1Q13905 1077 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 GPR18Q14330 331 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 KRT72Q14CN4 511 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 Q5PR19 223 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 WASHC2DQ5SRD0 308 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 C10orf62Q5T681 223 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 LCE1AQ5T7P2 110 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 OTUD1Q5VV17 481 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 NUGGCQ68CJ6 796 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 TANGO2Q6ICL3 276 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 KIAA1324Q6UXG2 1013 aaKnown RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 ZNF517Q6ZMY9 492 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 C9orf47Q6ZRZ4 202 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 Q6ZTK2 550 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 KDELC2Q7Z4H8 507 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 ARHGAP30Q7Z6I6 1101 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 GALNT7Q86SF2 657 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 SAMD14Q8IZD0 417 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 CNTROBQ8N137 903 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 FBXL14Q8N1E6 418 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 GALNT15Q8N3T1 639 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 TMEM217Q8N7C4 229 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 PTGR2Q8N8N7 351 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 C7orf57Q8NEG2 295 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 CMASQ8NFW8 434 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 OR1N1Q8NGS0 311 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 FAM110DQ8TAY7 271 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-208ENST00000490788 AFG1LQ8WV93 481 aa2.35□□□□□ -2.03
HMGB1-208ENST00000490788 ZNF333Q96JL9 665 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms