RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 RRM1P23921 792 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 L1CAMP32004 1257 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 RPIAP49247 311 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 PFN3P60673 137 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 EIF2B5Q13144 721 aaKnown RBP8.36□□□□□ -1.07
USP39-216ENST00000490193 EIF3IQ13347 325 aaKnown RBP8.36□□□□□ -1.07
USP39-216ENST00000490193 PNOCQ13519 176 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 DEFB133Q30KQ1 61 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 LINC00303Q3SY05 128 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 EFHC1Q5JVL4 640 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 PERM1Q5SV97 790 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 TPRG1LQ5T0D9 272 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 SMYD5Q6GMV2 418 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 PRICKLE2Q7Z3G6 844 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 C14orf80Q86SX3 495 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 SLC35F3Q8IY50 421 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 ZNF683Q8IZ20 524 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 EHBP1Q8NDI1 1231 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 ZNF606Q8WXB4 792 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 GLMNQ92990 594 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 FEM1CQ96JP0 617 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 IL12RB2Q99665 862 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 SEMA3CQ99985 751 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 FAM117AQ9C073 453 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 CEP44Q9C0F1 390 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 SCAND2PQ9GZW5 306 aaPredicted RBP8.36□□□□□ -1.07
USP39-216ENST00000490193 IGLV3-10A0A075B6K4 115 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 CXorf51AA0A1B0GTR3 108 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 DRGXA6NNA5 263 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 LMO7DNF2Z398 122 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 SMAPO00193 183 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 TOR1BO14657 336 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 FPGTO14772 594 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 PLD2O14939 933 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 SPINT1O43278 529 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 TSPAN6O43657 245 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 NOBOXO60393 691 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 DAB1O75553 588 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 CNTN5O94779 1100 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 LETM1O95202 739 aaPredicted RBP8.35□□□□□ -1.07
USP39-216ENST00000490193 HSP90AA1P07900 732 aaKnown RBP8.35□□□□□ -1.07
USP39-216ENST00000490193 ITGB6P18564 788 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 NOS2P35228 1153 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 RECQLP46063 649 aaPredicted RBP8.35□□□□□ -1.07
USP39-216ENST00000490193 SLC20A2Q08357 652 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 NFATC3Q12968 1075 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 PDE1CQ14123 709 aaPredicted RBP8.35□□□□□ -1.07
USP39-216ENST00000490193 SPIDRQ14159 915 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 DRAP1Q14919 205 aaPredicted RBP8.35□□□□□ -1.07
USP39-216ENST00000490193 ZSCAN23Q3MJ62 389 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 ALFQ53S48 1182 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 BRMS1LQ5PSV4 323 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 ARTNQ5T4W7 220 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 ACBD5Q5T8D3 534 aaPredicted RBP8.35□□□□□ -1.07
USP39-216ENST00000490193 OTUD1Q5VV17 481 aaPredicted RBP8.35□□□□□ -1.07
USP39-216ENST00000490193 OLFML1Q6UWY5 402 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 ZNF783Q6ZMS7 281 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 DPY19L3Q6ZPD9 716 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 SLC26A9Q7LBE3 791 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 HSCBQ8IWL3 235 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 TRIM59Q8IWR1 403 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 PCDH20Q8N6Y1 951 aaKnown RBP8.35□□□□□ -1.07
USP39-216ENST00000490193 ZNF397Q8NF99 534 aaPredicted RBP8.35□□□□□ -1.07
USP39-216ENST00000490193 GRIN3AQ8TCU5 1115 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 LMX1AQ8TE12 382 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 RAB7BQ96AH8 199 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 SGF29Q96ES7 293 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 CPXM1Q96SM3 734 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 CCDC3Q9BQI4 270 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 TMEM51Q9NW97 253 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 ARHGEF38Q9NXL2 777 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 RRN3Q9NYV6 651 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 SPASTQ9UBP0 616 aa8.35□□□□□ -1.07
USP39-216ENST00000490193 APOBEC3BQ9UH17 382 aaKnown RBP8.35□□□□□ -1.07
USP39-216ENST00000490193 HEMK1Q9Y5R4 338 aaPredicted RBP8.35□□□□□ -1.07
USP39-216ENST00000490193 SYNJ2BP-COX16A0A087WUM0 186 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 A0A0D9SEW6 157 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 ILVBLA1L0T0 632 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 TMX2-CTNND1H3BSU7 103 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 I6L893 689 aaPredicted RBP8.34□□□□□ -1.07
USP39-216ENST00000490193 PSMA7O14818 248 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 MUSKO15146 869 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 THAP12O43422 761 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 SUV39H1O43463 412 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 GCATO75600 419 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 ZMPSTE24O75844 475 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 CENPBP07199 599 aaPredicted RBP8.34□□□□□ -1.07
USP39-216ENST00000490193 SFTPCP11686 197 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 KRT10P13645 584 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 KRT5P13647 590 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 GNA15P30679 374 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 SLC5A2P31639 672 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 CCKBRP32239 447 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 PPP1R2P41236 205 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 CXCR3P49682 368 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 SERPINH1P50454 418 aaKnown RBP8.34□□□□□ -1.07
USP39-216ENST00000490193 INHBCP55103 352 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 MARSP56192 900 aaKnown RBP8.34□□□□□ -1.07
USP39-216ENST00000490193 YPEL5P62699 121 aa8.34□□□□□ -1.07
USP39-216ENST00000490193 NME3Q13232 169 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms