RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 ZNF773Q6PK81 442 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 SPPL2CQ8IUH8 684 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 SNX29P2Q8IUI4 249 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 PLD6Q8N2A8 252 aaKnown RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 SAMD3Q8N6K7 520 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 POC5Q8NA72 575 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 CMASQ8NFW8 434 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 MOCOSQ96EN8 888 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 ZBTB45Q96K62 511 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 TUBA1CQ9BQE3 449 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 SOX17Q9H6I2 414 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 AGO4Q9HCK5 861 aaKnown RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 RUVBL2Q9Y230 463 aaKnown RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 SLC27A5Q9Y2P5 690 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 IFT52Q9Y366 437 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 CAB39Q9Y376 341 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 ZNFX1Q9P2E3 1918 aaKnown RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 COL5A3P25940 1745 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 BCLAF3A2AJT9 711 aaKnown RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 CCDC78A2IDD5 438 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 A6NL46 340 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 RAD51BO15315 384 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 TBC1D4O60343 1298 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 SEC24AO95486 1093 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 ERBB2P04626 1255 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 C2P06681 752 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 F7P08709 466 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 CD1EP15812 388 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 CYP2F1P24903 491 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 NR4A2P43354 598 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 KPNA2P52292 529 aaKnown RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 SNX17Q15036 470 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 BOLA3Q53S33 107 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 ZNF667Q5HYK9 610 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 AGAP7PQ5VUJ5 663 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 ATG14Q6ZNE5 492 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 VASH1Q7L8A9 365 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 COLGALT1Q8NBJ5 622 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 TFAP2BQ92481 460 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 KCNN1Q92952 543 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 CENPNQ96H22 339 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 ZFYVE19Q96K21 471 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 C17orf80Q9BSJ5 609 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 CEP41Q9BYV8 373 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 TBC1D13Q9NVG8 400 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 SYBUQ9NX95 663 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 ANKMY1Q9P2S6 941 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 DGAT1O75907 488 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 FARP2O94887 1054 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 APOA1P02647 267 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 EPHX2P34913 555 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 IDUAP35475 653 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 GNL1P36915 607 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 ARL4AP40617 200 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 RAP1GAPP47736 663 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 TUFMP49411 452 aaKnown RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 HLCSP50747 726 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 POU5F1BQ06416 359 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 LAMC2Q13753 1193 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 ATAD3BQ5T9A4 648 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 TAF2Q6P1X5 1199 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 PIWIL3Q7Z3Z3 882 aaKnown RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 DSG4Q86SJ6 1040 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 C14orf80Q86SX3 495 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 LINC00116Q8NCU8 138 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 LILRB4Q8NHJ6 448 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 HEXIM2Q96MH2 286 aaKnown RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 CPXM1Q96SM3 734 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 SEPHS2Q99611 448 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 ACO2Q99798 780 aaKnown RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 COQ7Q99807 217 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 RMND5AQ9H871 391 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 DUS2Q9NX74 493 aaKnown RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 KIAA1522Q9P206 1035 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 KLHL8Q9P2G9 620 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-209ENST00000487188 ANGPTL3Q9Y5C1 460 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 SNX9Q9Y5X1 595 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 PTPRJQ12913 1337 aa6.31□□□□□ -1.4
VPS13D-209ENST00000487188 VWA5AO00534 786 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 TNPO2O14787 897 aaKnown RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 NRP2O60462 931 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 SYNCRIPO60506 623 aaKnown RBP6.3□□□□□ -1.4
VPS13D-209ENST00000487188 GABBR2O75899 941 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 MATN1P21941 496 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ALDH4A1P30038 563 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 RGS7P49802 495 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 AP3M2P53677 418 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 OSTNP61366 133 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 MPP1Q00013 466 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ECT2LQ008S8 904 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 IMPG1Q17R60 797 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 DUOXA2Q1HG44 320 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 SLC27A3Q5K4L6 730 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 SPANXN3Q5MJ09 141 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 HMBOX1Q6NT76 420 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 PLEKHG7Q6ZR37 379 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 C15orf39Q6ZRI6 1047 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ARMC8Q8IUR7 673 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 PARP8Q8N3A8 854 aa6.3□□□□□ -1.4
VPS13D-209ENST00000487188 ZNF555Q8NEP9 628 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms