RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 IL1AP01583 271 aa4.12□□□□□ -1.75
VPS41-213ENST00000485955 MMP3P08254 477 aa4.12□□□□□ -1.75
VPS41-213ENST00000485955 FCGR1AP12314 374 aa4.12□□□□□ -1.75
VPS41-213ENST00000485955 CKMT1AP12532 417 aa4.12□□□□□ -1.75
VPS41-213ENST00000485955 YWHAQP27348 245 aa4.12□□□□□ -1.75
VPS41-213ENST00000485955 DCTDP32321 178 aa4.12□□□□□ -1.75
VPS41-213ENST00000485955 ART1P52961 327 aa4.12□□□□□ -1.75
VPS41-213ENST00000485955 RRP1P56182 461 aaKnown RBP4.12□□□□□ -1.75
VPS41-213ENST00000485955 ACTR2P61160 394 aa4.12□□□□□ -1.75
VPS41-213ENST00000485955 IZUMO4Q1ZYL8 232 aa4.12□□□□□ -1.75
VPS41-213ENST00000485955 FTSJ3Q8IY81 847 aaKnown RBP4.12□□□□□ -1.75
VPS41-213ENST00000485955 FBXO40Q9UH90 709 aa4.12□□□□□ -1.75
VPS41-213ENST00000485955 CLDN16Q9Y5I7 305 aa4.12□□□□□ -1.75
VPS41-213ENST00000485955 A0A096LPK6 155 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 IGHV4-28A0A0C4DH34 117 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 hCG_1642624A0A1W2PR95 340 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 LINC01553A4QN01 128 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 SRRM3A6NNA2 597 aaPredicted RBP4.11□□□□□ -1.75
VPS41-213ENST00000485955 KDM4EB2RXH2 506 aaPredicted RBP4.11□□□□□ -1.75
VPS41-213ENST00000485955 MXI1P50539 228 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 SEC61A1P61619 476 aaKnown RBP4.11□□□□□ -1.75
VPS41-213ENST00000485955 SLC18A2Q05940 514 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 CTXN3Q4LDR2 81 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 C9orf57Q5W0N0 161 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 ANO1Q5XXA6 986 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 HERC6Q8IVU3 1022 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 TMEM57Q8N5G2 664 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 FAM216AQ8WUB2 273 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 TBC1D20Q96BZ9 403 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 CLSTN3Q9BQT9 956 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 SLC25A33Q9BSK2 321 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 NPLQ9BXD5 320 aaPredicted RBP4.11□□□□□ -1.75
VPS41-213ENST00000485955 CLK4Q9HAZ1 481 aaKnown RBP4.11□□□□□ -1.75
VPS41-213ENST00000485955 PTPRHQ9HD43 1115 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 ITM2CQ9NQX7 267 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 PCDHGB1Q9Y5G3 927 aa4.11□□□□□ -1.75
VPS41-213ENST00000485955 A0A1B0GUV1 79 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 BTBD18B2RXH4 712 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 J3KR12 359 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 SLC25A17O43808 307 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 KCNJ13O60928 360 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 ADAP00813 363 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 SERPINC1P01008 464 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 HMGB1P09429 215 aaKnown RBP4.1□□□□□ -1.75
VPS41-213ENST00000485955 GPR12P47775 334 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 COMPP49747 757 aaPredicted RBP4.1□□□□□ -1.75
VPS41-213ENST00000485955 ARSFP54793 590 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 ADORA2A-AS1P86434 159 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 CYP4A11Q02928 519 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 EEF1A2Q05639 463 aaKnown RBP4.1□□□□□ -1.75
VPS41-213ENST00000485955 TRAF2Q12933 501 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 CAPSQ13938 189 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 PDCD2Q16342 344 aaPredicted RBP4.1□□□□□ -1.75
VPS41-213ENST00000485955 SLC18A3Q16572 532 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 DENND1BQ6P3S1 775 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 Q6ZTC4 211 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 CREB3L2Q70SY1 520 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 PATL1Q86TB9 770 aaKnown RBP4.1□□□□□ -1.75
VPS41-213ENST00000485955 NR2C2APQ86WQ0 139 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 MCPH1Q8NEM0 835 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 CEP70Q8NHQ1 597 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 SPPL3Q8TCT6 385 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 TBC1D22AQ8WUA7 517 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 SLITRK1Q96PX8 696 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 RPS6KC1Q96S38 1066 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 FIZ1Q96SL8 496 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 PLSCR4Q9NRQ2 329 aa4.1□□□□□ -1.75
VPS41-213ENST00000485955 AGO1Q9UL18 857 aaKnown RBP4.1□□□□□ -1.75
VPS41-213ENST00000485955 A0A1B0GVM2 712 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 CHL1O00533 1208 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 TIMM23O14925 209 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 KIF1CO43896 1103 aaKnown RBP4.09□□□□□ -1.75
VPS41-213ENST00000485955 HBP1O60381 514 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 LDHAP00338 332 aaKnown RBP4.09□□□□□ -1.75
VPS41-213ENST00000485955 DHRS4L1P0CG22 281 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 TNNT1P13805 278 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 TTKP33981 857 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 GAS1P54826 345 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 RPL36AP83881 106 aaKnown RBP4.09□□□□□ -1.75
VPS41-213ENST00000485955 COASYQ13057 564 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 LPIN1Q14693 890 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 MON1AQ86VX9 555 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 GHDCQ8N2G8 530 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 ANKRD44Q8N8A2 993 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 RTP4Q96DX8 246 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 YME1L1Q96TA2 773 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 C1QTNF4Q9BXJ3 329 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 STN1Q9H668 368 aaKnown RBP4.09□□□□□ -1.75
VPS41-213ENST00000485955 TTC12Q9H892 705 aaPredicted RBP4.09□□□□□ -1.75
VPS41-213ENST00000485955 ZNF556Q9HAH1 456 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 ZNF112Q9UJU3 913 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 SLC45A1Q9Y2W3 748 aa4.09□□□□□ -1.75
VPS41-213ENST00000485955 RRP7AQ9Y3A4 280 aaKnown RBP4.09□□□□□ -1.75
VPS41-213ENST00000485955 MORC2Q9Y6X9 1032 aaPredicted RBP4.09□□□□□ -1.75
VPS41-213ENST00000485955 DYTNA2CJ06 578 aa4.08□□□□□ -1.76
VPS41-213ENST00000485955 FAM90A7PA6NKC0 464 aa4.08□□□□□ -1.76
VPS41-213ENST00000485955 SMTNL1A8MU46 457 aa4.08□□□□□ -1.76
VPS41-213ENST00000485955 FAM90A22PA8MWA6 464 aa4.08□□□□□ -1.76
VPS41-213ENST00000485955 FAM90A12PA8MX19 464 aa4.08□□□□□ -1.76
VPS41-213ENST00000485955 FAM90A23PA8MXZ1 464 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms