RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 GOLGA6L9A6NEM1 432 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 PRR5-ARHGAP8B1AHC4 643 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 FAM72CH0Y354 149 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 APOL1O14791 398 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 PPP1R12AO14974 1030 aaPredicted RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 ALOX15BO15296 676 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 MID1O15344 667 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 KDELR3O43731 214 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 LILRB5O75023 590 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 LRP3O75074 770 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 POP4O95707 220 aaKnown RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 SRCP12931 536 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 CHRNA3P32297 505 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 MAN1A1P33908 653 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 ACVRL1P37023 503 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 IRAK1P51617 712 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 TBX2Q13207 712 aaPredicted RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 DUOXA1Q1HG43 343 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 C5orf22Q49AR2 442 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 RAB6CQ53S08 254 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 HS1BP3Q53T59 392 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 CARD16Q5EG05 197 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 SPDYCQ5MJ68 293 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 FAM72AQ5TYM5 149 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 DAB2IPQ5VWQ8 1189 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 KAZNQ674X7 775 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 FAM72DQ6L9T8 149 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 LEKR1Q6ZMV7 388 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 USP30Q70CQ3 517 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 FAM72BQ86X60 149 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 KDF1Q8NAX2 398 aaPredicted RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 PIP4K2CQ8TBX8 421 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 PDCD6IPQ8WUM4 868 aaKnown RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 HMCESQ96FZ2 354 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 RBM41Q96IZ5 413 aaKnown RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 GTPBP2Q9BX10 602 aaKnown RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 OSBPL1AQ9BXW6 950 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 TRIM7Q9C029 511 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 MKRN2Q9H000 416 aaKnown RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 RAB6CQ9H0N0 254 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 TMEM245Q9H330 911 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 PABPC3Q9H361 631 aaKnown RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 MTG2Q9H4K7 406 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 OSGEPQ9NPF4 335 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 ANLNQ9NQW6 1124 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 AASDHPPTQ9NRN7 309 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 SEPT10Q9P0V9 454 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 RCOR3Q9P2K3 495 aaPredicted RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 HECAQ9UBI9 543 aaPredicted RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 SEPT3Q9UH03 358 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 INTS6Q9UL03 887 aaKnown RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 TPX2Q9ULW0 747 aaKnown RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 HEY1Q9Y5J3 304 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 SHROOM3Q8TF72 1996 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 ATXN2Q99700 1313 aaKnown RBP8.18□□□□□ -1.1
USP40-216ENST00000485943 FANCMQ8IYD8 2048 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 NUP205Q92621 2012 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 CKAP5Q14008 2032 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 IGHV1OR15-9A0A0B4J2B8 117 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 ANTXRLA6NF34 631 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 PROB1E7EW31 1015 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 MCF2LO15068 1137 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 PSTPIP1O43586 416 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 MAGEC1O60732 1142 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 TMCC1O94876 653 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 EPN2O95208 641 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 BCKDHBP21953 392 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 AMPD1P23109 780 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 MSNP26038 577 aaKnown RBP8.17□□□□□ -1.1
USP40-216ENST00000485943 SERPINA4P29622 427 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 MAPK8P45983 427 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 HCAR3P49019 387 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 PAPOLAP51003 745 aaKnown RBP8.17□□□□□ -1.1
USP40-216ENST00000485943 CCNHP51946 323 aaPredicted RBP8.17□□□□□ -1.1
USP40-216ENST00000485943 NEK3P51956 506 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 VAV2P52735 878 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 EPHB1P54762 984 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 RPS14P62263 151 aaKnown RBP8.17□□□□□ -1.1
USP40-216ENST00000485943 DYNLT1P63172 113 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 FOXC1Q12948 553 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 SGCGQ13326 291 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 TFDP2Q14188 446 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 RFTN1Q14699 578 aaPredicted RBP8.17□□□□□ -1.1
USP40-216ENST00000485943 CCDC6Q16204 474 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 DPYSL2Q16555 572 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 UAP1L1Q3KQV9 507 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 TRIM61Q5EBN2 209 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 MARC1Q5VT66 337 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 DCAF12L1Q5VU92 463 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 PMS2CLQ68D20 193 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 ERAP2Q6P179 960 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 ASCL5Q7RTU5 278 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 PEX26Q7Z412 305 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 POLNQ7Z5Q5 900 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 KIAA0907Q7Z7F0 614 aaPredicted RBP8.17□□□□□ -1.1
USP40-216ENST00000485943 SYT12Q8IV01 421 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 OR2AP1Q8NGE2 309 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 KIAA1524Q8TCG1 905 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 ZNF670Q9BS34 389 aa8.17□□□□□ -1.1
USP40-216ENST00000485943 C1QTNF7Q9BXJ2 289 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms