RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 WASH4PA8MWX3 477 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 TAF4O00268 1085 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 TOR1BO14657 336 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 SLC31A1O15431 190 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 FGF10O15520 208 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 KDELR3O43731 214 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 POP4O95707 220 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 ALPPL2P10696 532 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 ACVRL1P37023 503 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 RABIFP47224 123 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 RAD51Q06609 339 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 BNIP3Q12983 259 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 ZNF211Q13398 564 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 NCAPHQ15003 741 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 PARP15Q460N3 678 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 ZNF805Q5CZA5 627 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 PRAMEF14Q5SWL7 426 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 GCNT7Q6ZNI0 430 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 PARS2Q7L3T8 475 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 CCDC185Q8N715 623 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 OR4C6Q8NH72 309 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 NXPE2Q96DL1 559 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 GDAP1L1Q96MZ0 367 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 LENG8Q96PV6 779 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 CNPY3Q9BT09 278 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 DUSP23Q9BVJ7 150 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 SLC17A9Q9BYT1 436 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 ZDHHC6Q9H6R6 413 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 USP29Q9HBJ7 922 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 NDFIP2Q9NV92 336 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 HECAQ9UBI9 543 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 DNAI1Q9UI46 699 aa12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 ZFR2Q9UPR6 939 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 FCF1Q9Y324 198 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-207ENST00000481335 FAM72CH0Y354 149 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 H3BM21 787 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 CCP110O43303 1012 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 PRLRP16471 622 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 EPHB2P29323 1055 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 DNA2P51530 1060 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 SUOXP51687 545 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 HNRNPKP61978 463 aaKnown RBP eCLIP12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 E2F1Q01094 437 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 GRM3Q14832 879 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 PROX2Q3B8N5 592 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 PPP1R15BQ5SWA1 713 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 FAM72AQ5TYM5 149 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 ACAD10Q6JQN1 1059 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 FAM72DQ6L9T8 149 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 FAM72BQ86X60 149 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 MCEEQ96PE7 176 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 TM6SF2Q9BZW4 377 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 NRSN2Q9GZP1 204 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 HSD3B7Q9H2F3 369 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 SEPT11Q9NVA2 429 aaKnown RBP12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 NLGN3Q9NZ94 848 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 FZD10Q9ULW2 581 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 MFHAS1Q9Y4C4 1052 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 GPSM3Q9Y4H4 160 aa12.33□□□□□ -0.44
SQSTM1-207ENST00000481335 NBEAQ8NFP9 2946 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 TRABD2BA6NFA1 517 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 C16orf96A6NNT2 1141 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 SMTNL1A8MU46 457 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 FPGTO14772 594 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 PIAS2O75928 621 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 IGSF6O95976 241 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 GP1BAP07359 652 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 JUPP14923 745 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 DGKAP23743 735 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 ZNF135P52742 658 aaPredicted RBP12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 TYRO3Q06418 890 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 DNAJC3Q13217 504 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 SGCGQ13326 291 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 RAB6CQ53S08 254 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 HES3Q5TGS1 186 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 SEL1L3Q68CR1 1132 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 DCUN1D2Q6PH85 259 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 PTAR1Q7Z6K3 402 aaPredicted RBP12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 PARGQ86W56 976 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 MCOLN2Q8IZK6 566 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 SLC22A18ASQ8N1D0 253 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 UMODL1-AS1Q8N2C9 162 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 FAM181AQ8N9Y4 354 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 OR13H1Q8NG92 308 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 MDM1Q8TC05 714 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 HCAR2Q8TDS4 363 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 FNIP1Q8TF40 1166 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 TBATAQ96M53 351 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 NCAPGQ9BPX3 1015 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 SYT11Q9BT88 431 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 C1QTNF7Q9BXJ2 289 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 C1QTNF2Q9BXJ5 285 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 CALN1Q9BXU9 219 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 CPEB1Q9BZB8 566 aaKnown RBP12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 TTYH3Q9C0H2 523 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 RAB6CQ9H0N0 254 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 PARVAQ9NVD7 372 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 NCKIPSDQ9NZQ3 722 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 DKK3Q9UBP4 350 aa12.32□□□□□ -0.44
SQSTM1-207ENST00000481335 LHX6Q9UPM6 363 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms