RNA–Protein interactions for RNA: ENST00000473421.1

TRAF4-209, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 585 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-209ENST00000473421 ACVRL1P37023 503 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 CXCR3P49682 368 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 DNA2P51530 1060 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 CCNHP51946 323 aaPredicted RBP12.85□□□□□ -0.35
TRAF4-209ENST00000473421 NEK3P51956 506 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 RNASE9P60153 205 aaKnown RBP12.85□□□□□ -0.35
TRAF4-209ENST00000473421 RPS21P63220 83 aaKnown RBP12.85□□□□□ -0.35
TRAF4-209ENST00000473421 KRT83P78385 493 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 NR0B2Q15466 257 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 ARHGAP44Q17R89 818 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 PRRT3Q5FWE3 981 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 EFHC1Q5JVL4 640 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 LEKR1Q6ZMV7 388 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 SFTPA2Q8IWL1 248 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 NELFBQ8WX92 580 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 EXTL1Q92935 676 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 SMARCE1Q969G3 411 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 FUBP1Q96AE4 644 aaKnown RBP12.85□□□□□ -0.35
TRAF4-209ENST00000473421 CENPTQ96BT3 561 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 DHTKD1Q96HY7 919 aaPredicted RBP12.85□□□□□ -0.35
TRAF4-209ENST00000473421 C2orf49Q9BVC5 232 aaPredicted RBP12.85□□□□□ -0.35
TRAF4-209ENST00000473421 TM6SF2Q9BZW4 377 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 USP29Q9HBJ7 922 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 DYRK4Q9NR20 520 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 MBNL1Q9NR56 388 aaKnown RBP12.85□□□□□ -0.35
TRAF4-209ENST00000473421 NDFIP2Q9NV92 336 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 ASNSD1Q9NWL6 643 aa12.85□□□□□ -0.35
TRAF4-209ENST00000473421 FARP1Q9Y4F1 1045 aaPredicted RBP12.85□□□□□ -0.35
TRAF4-209ENST00000473421 UBR5O95071 2799 aaPredicted RBP12.85□□□□□ -0.35
TRAF4-209ENST00000473421 SCN8AQ9UQD0 1980 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 A0A1W2PQM1 296 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 NTN3O00634 580 aaPredicted RBP12.84□□□□□ -0.35
TRAF4-209ENST00000473421 PSMA7O14818 248 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 MED7O43513 233 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 DAB1O75553 588 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 GLI1P08151 1106 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 TSHRP16473 764 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 IGFALSP35858 605 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 USP8P40818 1118 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 RABIFP47224 123 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 SLC6A3Q01959 620 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 MEA1Q16626 185 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 C2CD6Q53TS8 623 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 C11orf57Q6ZUT1 292 aaPredicted RBP12.84□□□□□ -0.35
TRAF4-209ENST00000473421 SLC26A9Q7LBE3 791 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 DCP2Q8IU60 420 aaKnown RBP12.84□□□□□ -0.35
TRAF4-209ENST00000473421 WDR36Q8NI36 951 aaKnown RBP12.84□□□□□ -0.35
TRAF4-209ENST00000473421 FEM1CQ96JP0 617 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 CCNL2Q96S94 520 aaPredicted RBP12.84□□□□□ -0.35
TRAF4-209ENST00000473421 PPP1R9BQ96SB3 815 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 TBCBQ99426 244 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 HEPHQ9BQS7 1158 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 ZDHHC6Q9H6R6 413 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 WDCPQ9H6R7 721 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 SYNDIG1Q9H7V2 258 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 IL17BQ9UHF5 180 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 IPO11Q9UI26 975 aaKnown RBP12.84□□□□□ -0.35
TRAF4-209ENST00000473421 CTNND2Q9UQB3 1225 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 RELNP78509 3460 aa12.84□□□□□ -0.35
TRAF4-209ENST00000473421 DOPEY2Q9Y3R5 2298 aa12.83□□□□□ -0.35
TRAF4-209ENST00000473421 IGLV3-10A0A075B6K4 115 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 C16orf96A6NNT2 1141 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 TERTO14746 1132 aaKnown RBP12.83□□□□□ -0.36
TRAF4-209ENST00000473421 FPGTO14772 594 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 TPP1O14773 563 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 SRGAP2O75044 1071 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 AFPP02771 609 aaKnown RBP12.83□□□□□ -0.36
TRAF4-209ENST00000473421 FAM87AP0C7U9 286 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 OR1E1P30953 314 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 NOS2P35228 1153 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 SERPINH1P50454 418 aaKnown RBP12.83□□□□□ -0.36
TRAF4-209ENST00000473421 CSRP3P50461 194 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 CLCN6P51797 869 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 CYP4F2P78329 520 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 CCL7P80098 99 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 CARD16Q5EG05 197 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 COLEC12Q5KU26 742 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 C6orf132Q5T0Z8 1188 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 KIAA1161Q6NSJ0 714 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 TRIM65Q6PJ69 517 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 SETD3Q86TU7 594 aaPredicted RBP12.83□□□□□ -0.36
TRAF4-209ENST00000473421 VASH2Q86V25 355 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 PHACTR4Q8IZ21 702 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 NT5C3BQ969T7 300 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 CCDC114Q96M63 670 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 LENG8Q96PV6 779 aaPredicted RBP12.83□□□□□ -0.36
TRAF4-209ENST00000473421 IL12RB2Q99665 862 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 STARD5Q9NSY2 213 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 SIRPGQ9P1W8 387 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 APOBEC3BQ9UH17 382 aaKnown RBP12.83□□□□□ -0.36
TRAF4-209ENST00000473421 ATXN7L1Q9ULK2 861 aaPredicted RBP12.83□□□□□ -0.36
TRAF4-209ENST00000473421 PADI4Q9UM07 663 aa12.83□□□□□ -0.36
TRAF4-209ENST00000473421 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.83□□□□□ -0.36
TRAF4-209ENST00000473421 TLN1Q9Y490 2541 aaKnown RBP12.83□□□□□ -0.36
TRAF4-209ENST00000473421 CCDC187A0A096LP49 1063 aa12.82□□□□□ -0.36
TRAF4-209ENST00000473421 LMO7DNF2Z398 122 aa12.82□□□□□ -0.36
TRAF4-209ENST00000473421 H3BM21 787 aa12.82□□□□□ -0.36
TRAF4-209ENST00000473421 BIN1O00499 593 aa12.82□□□□□ -0.36
TRAF4-209ENST00000473421 AP1G1O43747 822 aa12.82□□□□□ -0.36
TRAF4-209ENST00000473421 MMP20O60882 483 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms