RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 RBBP8Q99708 897 aa18.5■□□□□ 0.55
COL9A3-205ENST00000466192 TRIM55Q9BYV6 548 aa18.5■□□□□ 0.55
COL9A3-205ENST00000466192 PDFQ9HBH1 243 aa18.5■□□□□ 0.55
COL9A3-205ENST00000466192 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.5■□□□□ 0.55
COL9A3-205ENST00000466192 DOCK6Q96HP0 2047 aa18.5■□□□□ 0.55
COL9A3-205ENST00000466192 F11P03951 625 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 CNPP09543 421 aaKnown RBP18.49■□□□□ 0.55
COL9A3-205ENST00000466192 TYK2P29597 1187 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 LBX1P52954 281 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 TMPRSS15P98073 1019 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 GNA12Q03113 381 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 CHI3L2Q15782 390 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 PPM1JQ5JR12 505 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 RABGAP1LQ5R372 815 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 POTEHQ6S545 545 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 DNAJC5GQ8N7S2 189 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 OR7D4Q8NG98 312 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 ARRDC2Q8TBH0 407 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 ATP2A3Q93084 1043 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 ATP13A1Q9HD20 1204 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 IARS2Q9NSE4 1012 aaKnown RBP18.49■□□□□ 0.55
COL9A3-205ENST00000466192 SMPD4Q9NXE4 827 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 UXTQ9UBK9 157 aaPredicted RBP18.49■□□□□ 0.55
COL9A3-205ENST00000466192 E2F8A0AVK6 867 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 KLF11O14901 512 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 GJB3O75712 270 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 DCTN3O75935 186 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 HOXD9P28356 352 aaPredicted RBP18.49■□□□□ 0.55
COL9A3-205ENST00000466192 CA8P35219 290 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 GMPRP36959 345 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 ABCG1P45844 678 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 HTRA4P83105 476 aaPredicted RBP18.49■□□□□ 0.55
COL9A3-205ENST00000466192 ADGRF1Q5T601 910 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 N4BP2L1Q5TBK1 243 aaPredicted RBP18.49■□□□□ 0.55
COL9A3-205ENST00000466192 CES4AQ5XG92 561 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 NLRP9Q7RTR0 991 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 CMC1Q7Z7K0 106 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 SLC25A41Q8N5S1 370 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 PPHLN1Q8NEY8 458 aaKnown RBP18.49■□□□□ 0.55
COL9A3-205ENST00000466192 E2F7Q96AV8 911 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 ZFRQ96KR1 1074 aaKnown RBP18.49■□□□□ 0.55
COL9A3-205ENST00000466192 MAGEH1Q9H213 219 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 IL21Q9HBE4 155 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 ARNT2Q9HBZ2 717 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 VPS45Q9NRW7 570 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 SIRPGQ9P1W8 387 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 TCAF1Q9Y4C2 921 aa18.49■□□□□ 0.55
COL9A3-205ENST00000466192 MUSKO15146 869 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 TGM5O43548 720 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 RASSF9O75901 435 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 CTSAP10619 480 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 SPRP35270 261 aaPredicted RBP18.48■□□□□ 0.55
COL9A3-205ENST00000466192 BST1Q10588 318 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 TMCO4Q5TGY1 634 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 FSTL4Q6MZW2 842 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 ESRP1Q6NXG1 681 aaKnown RBP18.48■□□□□ 0.55
COL9A3-205ENST00000466192 KYAT3Q6YP21 454 aaKnown RBP18.48■□□□□ 0.55
COL9A3-205ENST00000466192 GPR65Q8IYL9 337 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 FIBCD1Q8N539 461 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 DCLK2Q8N568 766 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 TADA1Q96BN2 335 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 MCMBPQ9BTE3 642 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 RETREG1Q9H6L5 497 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 EMCNQ9ULC0 261 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 ACTL7AQ9Y615 435 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 TSPAN3O60637 253 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 GLRA3O75311 464 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 BPGMP07738 259 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 MBL2P11226 248 aaPredicted RBP18.48■□□□□ 0.55
COL9A3-205ENST00000466192 LIMK2P53671 638 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 PDPK2PQ6A1A2 396 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 TBC1D1Q86TI0 1168 aaPredicted RBP18.48■□□□□ 0.55
COL9A3-205ENST00000466192 TRIM42Q8IWZ5 723 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 ZNF398Q8TD17 642 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 TMEM106CQ9BVX2 250 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 TRPC7Q9HCX4 862 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 SNX15Q9NRS6 342 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 CXXC1Q9P0U4 656 aaPredicted RBP18.48■□□□□ 0.55
COL9A3-205ENST00000466192 SLC2A6Q9UGQ3 507 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 DCDC2Q9UHG0 476 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 MAFFQ9ULX9 164 aa18.48■□□□□ 0.55
COL9A3-205ENST00000466192 SCAMP3O14828 347 aaKnown RBP18.47■□□□□ 0.55
COL9A3-205ENST00000466192 CLDN11O75508 207 aa18.47■□□□□ 0.55
COL9A3-205ENST00000466192 ARNTP27540 789 aa18.47■□□□□ 0.55
COL9A3-205ENST00000466192 ATG16L1Q676U5 607 aa18.47■□□□□ 0.55
COL9A3-205ENST00000466192 IL31Q6EBC2 164 aa18.47■□□□□ 0.55
COL9A3-205ENST00000466192 ZCCHC23Q6ZST2 131 aa18.47■□□□□ 0.55
COL9A3-205ENST00000466192 KLHL23Q8NBE8 558 aa18.47■□□□□ 0.55
COL9A3-205ENST00000466192 PTCD2Q8WV60 388 aaKnown RBP18.47■□□□□ 0.55
COL9A3-205ENST00000466192 SEMA3CQ99985 751 aa18.47■□□□□ 0.55
COL9A3-205ENST00000466192 ZNF395Q9H8N7 513 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-205ENST00000466192 MRM3Q9HC36 420 aaKnown RBP18.47■□□□□ 0.55
COL9A3-205ENST00000466192 ANKRD36A6QL64 1941 aa18.47■□□□□ 0.55
COL9A3-205ENST00000466192 MTCL1Q9Y4B5 1905 aaKnown RBP18.47■□□□□ 0.55
COL9A3-205ENST00000466192 TGDSO95455 350 aa18.47■□□□□ 0.55
COL9A3-205ENST00000466192 FGBP02675 491 aa18.47■□□□□ 0.55
COL9A3-205ENST00000466192 GLDCP23378 1020 aa18.47■□□□□ 0.55
COL9A3-205ENST00000466192 ARCN1P48444 511 aaKnown RBP18.47■□□□□ 0.55
COL9A3-205ENST00000466192 SMAD3P84022 425 aaKnown RBP18.47■□□□□ 0.55
COL9A3-205ENST00000466192 ZXDBP98169 803 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms