RNA–Protein interactions for RNA: ENST00000463622.6

SCFD1-204, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 1,943 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-204ENST00000463622 GAGE12BA1L429 117 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 GAGE12HA6NDE8 117 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 DIRC3C9JPN6 131 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 GLUD1P00367 558 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 KRT18P05783 430 aaKnown RBP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 XRCC6P12956 609 aaKnown RBP eCLIP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 CD72P21854 359 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 TMOD1P28289 359 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 HOXA6P31267 233 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 CA8P35219 290 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ALDH1A3P47895 512 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 PTH2RP49190 550 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 LAMTOR4Q0VGL1 99 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 FOXI1Q12951 378 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 UBXN2BQ14CS0 331 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 IQCB1Q15051 598 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 AGAP9Q5VTM2 703 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 KLHL10Q6JEL2 608 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 DPY19L2P1Q6NXN4 242 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ZNF852Q6ZMS4 543 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 LUZP1Q86V48 1076 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 RHPN2Q8IUC4 686 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 DHX40Q8IX18 779 aaKnown RBP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 MYCT1Q8N699 235 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 PPM1NQ8N819 430 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 OR2I1PQ8NGU4 316 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 CCHCR1Q8TD31 782 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 CAVIN3Q969G5 261 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ZBTB45Q96K62 511 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 FAM167AQ96KS9 214 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 NLRP4Q96MN2 994 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 HERC2P3Q9BVR0 1158 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 CUEDC2Q9H467 287 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 TOR3AQ9H497 397 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 RXFP3Q9NSD7 469 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 NRBP2Q9NSY0 501 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 CCM2LQ9NUG4 571 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 MARCH5Q9NX47 278 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 FNIP2Q9P278 1114 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 SUCLA2Q9P2R7 463 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 USP25Q9UHP3 1055 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 SIK3Q9Y2K2 1263 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ACTL7AQ9Y615 435 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 FANCMQ8IYD8 2048 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 FNDC1Q4ZHG4 1894 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 PVALEFA0A1B0GWK0 134 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 TMEM8BA6NDV4 472 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 LRRIQ4A6NIV6 560 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 SRRM3A6NNA2 597 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 K7ENM7 598 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 CLIC2O15247 247 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 PAPSS2O95340 614 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 GCNT3O95395 438 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 POU2F2P09086 479 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 HNRNPA1P09651 372 aaKnown RBP eCLIP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ZNF806P0C7X5 589 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 SPATA31D3P0C874 917 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ITGAMP11215 1152 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ATP1A3P13637 1013 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 PCSK1P29120 753 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ADSSP30520 456 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 CASP4P49662 377 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 MBTD1Q05BQ5 628 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 KCNB1Q14721 858 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ZNF658Q5TYW1 1059 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ANKRD40Q6AI12 368 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 TTI2Q6NXR4 508 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ZNF529Q6P280 563 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 SPATA31D4Q6ZUB0 917 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 MTSS1LQ765P7 747 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 OTUD6AQ7L8S5 288 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ZNF720Q7Z2F6 126 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 HAUS6Q7Z4H7 955 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 COLGALT2Q8IYK4 626 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 AOPEPQ8N6M6 819 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 RNF149Q8NC42 400 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 HOXB13Q92826 284 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 FGF13Q92913 245 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 CPB2Q96IY4 423 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 MAP7D2Q96T17 732 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 CBWD1Q9BRT8 395 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ADI1Q9BV57 179 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 GCOM2Q9BZD3 368 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 MAGEF1Q9HAY2 307 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 PARVGQ9HBI0 331 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 TRPV5Q9NQA5 729 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 SAMSN1Q9NSI8 373 aaKnown RBP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 EXOC1Q9NV70 894 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 KLHL11Q9NVR0 708 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 FBXO34Q9NWN3 711 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 SYBUQ9NX95 663 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 SLC23A1Q9UHI7 598 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 RAB23Q9ULC3 237 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 ODF2LQ9ULJ1 636 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 MRPS17Q9Y2R5 130 aaKnown RBP3.87□□□□□ -1.79
SCFD1-204ENST00000463622 PCDHB2Q9Y5E7 798 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 COL4A3BPQ9Y5P4 624 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 DMXL2Q8TDJ6 3036 aa3.87□□□□□ -1.79
SCFD1-204ENST00000463622 MYH9P35579 1960 aaKnown RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms