RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 SORCS1Q8WY21 1168 aa8.87□□□□□ -0.99
COL28A1-205ENST00000453441 OR8D1Q8WZ84 308 aa8.87□□□□□ -0.99
COL28A1-205ENST00000453441 KRT35Q92764 455 aa8.87□□□□□ -0.99
COL28A1-205ENST00000453441 HDAC11Q96DB2 347 aa8.87□□□□□ -0.99
COL28A1-205ENST00000453441 TRIM44Q96DX7 344 aaPredicted RBP8.87□□□□□ -0.99
COL28A1-205ENST00000453441 MYO19Q96H55 970 aa8.87□□□□□ -0.99
COL28A1-205ENST00000453441 TSGA13Q96PP4 275 aa8.87□□□□□ -0.99
COL28A1-205ENST00000453441 FRMD8P1Q9BZ68 369 aaPredicted RBP8.87□□□□□ -0.99
COL28A1-205ENST00000453441 OSBPL8Q9BZF1 889 aa8.87□□□□□ -0.99
COL28A1-205ENST00000453441 SLC39A8Q9C0K1 460 aa8.87□□□□□ -0.99
COL28A1-205ENST00000453441 PDFQ9HBH1 243 aa8.87□□□□□ -0.99
COL28A1-205ENST00000453441 CACNA2D2Q9NY47 1150 aa8.87□□□□□ -0.99
COL28A1-205ENST00000453441 SEPT3Q9UH03 358 aa8.87□□□□□ -0.99
COL28A1-205ENST00000453441 IPO11Q9UI26 975 aaKnown RBP8.87□□□□□ -0.99
COL28A1-205ENST00000453441 A0A1W2PQF6 199 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 TCRBV21S2A2A0A5A6 115 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 HACD1B0YJ81 288 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 K7ESF4 209 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 MEN1O00255 615 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 MCF2LO15068 1137 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 DDX3YO15523 660 aaKnown RBP8.86□□□□□ -0.99
COL28A1-205ENST00000453441 WIPF1O43516 503 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 MFSD11O43934 449 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 SNAP91O60641 907 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 CST8O60676 142 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 ZNF217O75362 1048 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 IGSF6O95976 241 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 CES1P23141 567 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 PRKCHP24723 683 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 CCNCP24863 283 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 GARSP41250 739 aaKnown RBP8.86□□□□□ -0.99
COL28A1-205ENST00000453441 CSNK1DP48730 415 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 MARCKSL1P49006 195 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 STK19P49842 368 aaPredicted RBP8.86□□□□□ -0.99
COL28A1-205ENST00000453441 SNRPD1P62314 119 aaKnown RBP8.86□□□□□ -0.99
COL28A1-205ENST00000453441 SATB1Q01826 763 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 RAD51Q06609 339 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 XRCC4Q13426 336 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 HNRNPDQ14103 355 aaKnown RBP8.86□□□□□ -0.99
COL28A1-205ENST00000453441 ANGPT1Q15389 498 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 DLG2Q15700 870 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 TTC31Q49AM3 519 aaPredicted RBP8.86□□□□□ -0.99
COL28A1-205ENST00000453441 ACCSLQ4AC99 568 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 CCDC181Q5TID7 509 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 FAM46CQ5VWP2 391 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 ZNF776Q68DI1 518 aaPredicted RBP8.86□□□□□ -0.99
COL28A1-205ENST00000453441 C22orf39Q6P5X5 142 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 ZC3H14Q6PJT7 736 aaKnown RBP8.86□□□□□ -0.99
COL28A1-205ENST00000453441 LYSMD3Q7Z3D4 306 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 WDR5BQ86VZ2 330 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 LONP2Q86WA8 852 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 PLD5Q8N7P1 536 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 FRS2Q8WU20 508 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 ALG3Q92685 438 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 P3H4Q92791 437 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 NELL1Q92832 810 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 HAUS1Q96CS2 278 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 CELF6Q96J87 481 aaKnown RBP8.86□□□□□ -0.99
COL28A1-205ENST00000453441 GDAP1L1Q96MZ0 367 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 ACOX2Q99424 681 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 OSBPL1AQ9BXW6 950 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 RSPH9Q9H1X1 276 aaPredicted RBP8.86□□□□□ -0.99
COL28A1-205ENST00000453441 CD248Q9HCU0 757 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 PRSS16Q9NQE7 514 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 DTLQ9NZJ0 730 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 SLCO3A1Q9UIG8 710 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 HCN4Q9Y3Q4 1203 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 PCDHGA2Q9Y5H1 932 aa8.86□□□□□ -0.99
COL28A1-205ENST00000453441 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.86□□□□□ -0.99
COL28A1-205ENST00000453441 TTC34A8MYJ7 566 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 C1QTNF3-AMACRE9PGA6 284 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 CES2O00748 559 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 MATN3O15232 486 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 LZTS3O60299 673 aaPredicted RBP8.85□□□□□ -0.99
COL28A1-205ENST00000453441 MAFKO60675 156 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 SIN3BO75182 1162 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 TMCC1O94876 653 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 PRNPP04156 253 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 PYGMP11217 842 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 TDGF1P13385 188 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 GLDCP23378 1020 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 OXTRP30559 389 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 RHOAP61586 193 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 GBE1Q04446 702 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 PPIDQ08752 370 aaKnown RBP8.85□□□□□ -0.99
COL28A1-205ENST00000453441 NSUN2Q08J23 767 aaKnown RBP eCLIP8.85□□□□□ -0.99
COL28A1-205ENST00000453441 ZNF235Q14590 738 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 LBRQ14739 615 aaKnown RBP8.85□□□□□ -0.99
COL28A1-205ENST00000453441 USP39Q53GS9 565 aaKnown RBP8.85□□□□□ -0.99
COL28A1-205ENST00000453441 CARD16Q5EG05 197 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 ZNF569Q5MCW4 686 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 C9orf64Q5T6V5 341 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 PKN3Q6P5Z2 889 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 USP30Q70CQ3 517 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 KBTBD6Q86V97 674 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 CCDC13Q8IYE1 715 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 PLPP7Q8NBV4 271 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 TMIEQ8NEW7 156 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 OR2AP1Q8NGE2 309 aa8.85□□□□□ -0.99
COL28A1-205ENST00000453441 MAML1Q92585 1016 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms