RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 ZNF33AQ06730 810 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 CYTH1Q15438 398 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 TRIM61Q5EBN2 209 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 ARSIQ5FYB1 569 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 LYSMD4Q5XG99 296 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 SLC23A3Q6PIS1 610 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 ARHGAP36Q6ZRI8 547 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 VSIG1Q86XK7 387 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 SLC41A1Q8IVJ1 513 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 LRRC8AQ8IWT6 810 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 CCDC112Q8NEF3 446 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 OR2AP1Q8NGE2 309 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 FAM131CQ96AQ9 280 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 RNF157Q96PX1 679 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 DESI2Q9BSY9 194 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 TM6SF2Q9BZW4 377 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 PCED1AQ9H1Q7 454 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 NEUROG2Q9H2A3 272 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 GOLPH3Q9H4A6 298 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 WASF2Q9Y6W5 498 aa20.27■□□□□ 0.84
COL9A3-202ENST00000452372 LRRD1A4D1F6 860 aa20.26■□□□□ 0.83
COL9A3-202ENST00000452372 C3orf70A6NLC5 250 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-202ENST00000452372 ARHGAP6O43182 974 aa20.26■□□□□ 0.83
COL9A3-202ENST00000452372 PSTPIP1O43586 416 aa20.26■□□□□ 0.83
COL9A3-202ENST00000452372 KRT37O76014 449 aa20.26■□□□□ 0.83
COL9A3-202ENST00000452372 SEMA4FO95754 770 aa20.26■□□□□ 0.83
COL9A3-202ENST00000452372 TNNT1P13805 278 aa20.26■□□□□ 0.83
COL9A3-202ENST00000452372 DRD3P35462 400 aa20.26■□□□□ 0.83
COL9A3-202ENST00000452372 METAP1P53582 386 aa20.26■□□□□ 0.83
COL9A3-202ENST00000452372 KIF5AQ12840 1032 aa20.26■□□□□ 0.83
COL9A3-202ENST00000452372 PAFAH1B3Q15102 231 aaKnown RBP20.26■□□□□ 0.83
COL9A3-202ENST00000452372 DAAM2Q86T65 1068 aa20.26■□□□□ 0.83
COL9A3-202ENST00000452372 PQLC3Q8N755 202 aa20.26■□□□□ 0.83
COL9A3-202ENST00000452372 LRIG1Q96JA1 1093 aa20.26■□□□□ 0.83
COL9A3-202ENST00000452372 SP110Q9HB58 689 aa20.26■□□□□ 0.83
COL9A3-202ENST00000452372 PCDH15Q96QU1 1955 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 METTL12A8MUP2 240 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 KPNA3O00505 521 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-202ENST00000452372 LEFTY1O75610 366 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 POP4O95707 220 aaKnown RBP20.25■□□□□ 0.83
COL9A3-202ENST00000452372 DPP6P42658 865 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 NAP1L1P55209 391 aaKnown RBP20.25■□□□□ 0.83
COL9A3-202ENST00000452372 RHOAP61586 193 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 RFTN1Q14699 578 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-202ENST00000452372 MYLK3Q32MK0 819 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 NCBP2-AS2Q69YL0 99 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-202ENST00000452372 LRRC49Q8IUZ0 686 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 GRIN3AQ8TCU5 1115 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 HSPA12BQ96MM6 686 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 GDAP1L1Q96MZ0 367 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 FSCN3Q9NQT6 498 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 LHX3Q9UBR4 397 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 ANGPTL2Q9UKU9 493 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 WASF3Q9UPY6 502 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 ADGRG1Q9Y653 693 aa20.25■□□□□ 0.83
COL9A3-202ENST00000452372 ATXN2Q99700 1313 aaKnown RBP20.25■□□□□ 0.83
COL9A3-202ENST00000452372 RNF103O00237 685 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 SLC7A4O43246 635 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 MAFKO60675 156 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 PALMO75781 387 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 KRT1P04264 644 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 ENGP17813 658 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 CSRP1P21291 193 aaKnown RBP20.24■□□□□ 0.83
COL9A3-202ENST00000452372 NOVA1P51513 510 aaKnown RBP20.24■□□□□ 0.83
COL9A3-202ENST00000452372 CNTN1Q12860 1018 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 POM121L1PQ3SYA9 428 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 ODF2Q5BJF6 829 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 WDR45BQ5MNZ6 344 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 SYCP2LQ5T4T6 812 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 ATXN7L2Q5T6C5 722 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-202ENST00000452372 RYBPQ8N488 228 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-202ENST00000452372 KIAA1524Q8TCG1 905 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 DNASE2BQ8WZ79 361 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 VOPP1Q96AW1 172 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 RNF25Q96BH1 459 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-202ENST00000452372 ZNF599Q96NL3 588 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 C6orf106Q9H6K1 298 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-202ENST00000452372 CAPN10Q9HC96 672 aa20.24■□□□□ 0.83
COL9A3-202ENST00000452372 AKAP13Q12802 2813 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 KRIT1O00522 736 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 MFSD11O43934 449 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 IGSF6O95976 241 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 HOXD12P35452 270 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 RAD51Q06609 339 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 CCDC15Q0P6D6 951 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 IFI16Q16666 785 aaKnown RBP20.23■□□□□ 0.83
COL9A3-202ENST00000452372 DCAF12L1Q5VU92 463 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 KATNAL2Q8IYT4 538 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 ATPAF2Q8N5M1 289 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 OR2T34Q8NGX1 318 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 OR6K2Q8NGY2 324 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 ARRDC3Q96B67 414 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 PPP1R16AQ96I34 528 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 NUSAP1Q9BXS6 441 aaKnown RBP20.23■□□□□ 0.83
COL9A3-202ENST00000452372 MAK16Q9BXY0 300 aaKnown RBP20.23■□□□□ 0.83
COL9A3-202ENST00000452372 HDAC8Q9BY41 377 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 ZDHHC6Q9H6R6 413 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 DYRK4Q9NR20 520 aa20.23■□□□□ 0.83
COL9A3-202ENST00000452372 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms