RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 Q6ZVU0 165 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 B4GALNT4Q76KP1 1039 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 PGBD5Q8N414 524 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 ATL2Q8NHH9 583 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 GDAP1L1Q96MZ0 367 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 RUNDC3BQ96NL0 473 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 POLR1EQ9GZS1 481 aaKnown RBP11.75□□□□□ -0.53
SCN9A-204ENST00000452182 PRSS16Q9NQE7 514 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 FEZ2Q9UHY8 353 aaPredicted RBP11.75□□□□□ -0.53
SCN9A-204ENST00000452182 ZNF148Q9UQR1 794 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 RNF103O00237 685 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 MUSKO15146 869 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 PI15O43692 258 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 SYNCRIPO60506 623 aaKnown RBP11.75□□□□□ -0.53
SCN9A-204ENST00000452182 SIN3BO75182 1162 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 GCATO75600 419 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 NEBLO76041 1014 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 IGSF6O95976 241 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 HLA-DQB2P05538 268 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 COILP38432 576 aaPredicted RBP11.75□□□□□ -0.53
SCN9A-204ENST00000452182 RECQLP46063 649 aaPredicted RBP11.75□□□□□ -0.53
SCN9A-204ENST00000452182 DGKEP52429 567 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 SNX1Q13596 522 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 GRM3Q14832 879 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 P3H1Q32P28 736 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 CCDC137Q6PK04 289 aaKnown RBP11.75□□□□□ -0.53
SCN9A-204ENST00000452182 ZNF567Q8N184 647 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 FAM71DQ8N9W8 422 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 SPATA4Q8NEY3 305 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 SLCO2A1Q92959 643 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 PBXIP1Q96AQ6 731 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 LRIG1Q96JA1 1093 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 SPATA13Q96N96 652 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 NUDCD1Q96RS6 583 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 CPEB1Q9BZB8 566 aaKnown RBP11.75□□□□□ -0.53
SCN9A-204ENST00000452182 EPHX3Q9H6B9 360 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 C10orf88Q9H8K7 445 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 SEPT10Q9P0V9 454 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 PCYOX1Q9UHG3 505 aa11.75□□□□□ -0.53
SCN9A-204ENST00000452182 OPHN1O60890 802 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 PAPSS2O95340 614 aaPredicted RBP11.74□□□□□ -0.53
SCN9A-204ENST00000452182 POP4O95707 220 aaKnown RBP11.74□□□□□ -0.53
SCN9A-204ENST00000452182 DCNP07585 359 aaKnown RBP11.74□□□□□ -0.53
SCN9A-204ENST00000452182 WASP42768 502 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 RGRP47804 291 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 KCNJ1P48048 391 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 CCNHP51946 323 aaPredicted RBP11.74□□□□□ -0.53
SCN9A-204ENST00000452182 GDF10P55107 478 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 AP1S1P61966 158 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 RAD51Q06609 339 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 MTAPQ13126 283 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 SLC14A2Q15849 920 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 MYLK3Q32MK0 819 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 ANKRD20A2Q5SQ80 823 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 ANKRD20A1Q5TYW2 823 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 ANKRD20A3Q5VUR7 823 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 TTC27Q6P3X3 843 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 DPY19L3Q6ZPD9 716 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 PID1Q7Z2X4 250 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 DSG4Q86SJ6 1040 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 FBXL6Q8N531 539 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 ZNF366Q8N895 744 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 OR2T3Q8NH03 318 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 GRK7Q8WTQ7 553 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 VOPP1Q96AW1 172 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 AGAP3Q96P47 875 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 TM6SF2Q9BZW4 377 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 DDX47Q9H0S4 455 aaKnown RBP11.74□□□□□ -0.53
SCN9A-204ENST00000452182 SLC25A51Q9H1U9 297 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 RSPH9Q9H1X1 276 aaPredicted RBP11.74□□□□□ -0.53
SCN9A-204ENST00000452182 TNKS2Q9H2K2 1166 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 MTG2Q9H4K7 406 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 NT5MQ9NPB1 228 aa11.74□□□□□ -0.53
SCN9A-204ENST00000452182 KLHL8Q9P2G9 620 aaPredicted RBP11.74□□□□□ -0.53
SCN9A-204ENST00000452182 HECAQ9UBI9 543 aaPredicted RBP11.74□□□□□ -0.53
SCN9A-204ENST00000452182 INSIG1O15503 277 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 ZBTB24O43167 697 aaPredicted RBP11.73□□□□□ -0.53
SCN9A-204ENST00000452182 COL9A1P20849 921 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 CD68P34810 354 aaPredicted RBP11.73□□□□□ -0.53
SCN9A-204ENST00000452182 SCNN1BP51168 640 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 COPAP53621 1224 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 ATXN7L2Q5T6C5 722 aaPredicted RBP11.73□□□□□ -0.53
SCN9A-204ENST00000452182 ITPRIPL1Q6GPH6 555 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 KIAA1211LQ6NV74 962 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 C4orf22Q6V702 233 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 SRLQ86TD4 932 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 CCDC89Q8N998 374 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 TMIEQ8NEW7 156 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 ARRDC2Q8TBH0 407 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 OR8D1Q8WZ84 308 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 IMP4Q96G21 291 aaKnown RBP11.73□□□□□ -0.53
SCN9A-204ENST00000452182 EXOC2Q96KP1 924 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 PPP1R2P1Q96PQ5 205 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 FCRL5Q96RD9 977 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 TUBGCP5Q96RT8 1024 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 FAM129BQ96TA1 746 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 HEPHQ9BQS7 1158 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 OSBPL1AQ9BXW6 950 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 CEP41Q9BYV8 373 aa11.73□□□□□ -0.53
SCN9A-204ENST00000452182 L2HGDHQ9H9P8 463 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms