RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 OSBPL1AQ9BXW6 950 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 ZDHHC6Q9H6R6 413 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 SIX2Q9NPC8 291 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 SPASTQ9UBP0 616 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 DACH1Q9UI36 760 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 PCDHB1Q9Y5F3 818 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 WASF2Q9Y6W5 498 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 C16orf96A6NNT2 1141 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 ERVH48-1M5A8F1 160 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 KRIT1O00522 736 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 TOR1BO14657 336 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 ZNF821O75541 412 aaPredicted RBP13.52□□□□□ -0.25
HMGB3-204ENST00000448905 NEBLO76041 1014 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 JUNDP17535 347 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 ADRA1BP35368 520 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 SNRPD1P62314 119 aaKnown RBP13.52□□□□□ -0.25
HMGB3-204ENST00000448905 YPEL5P62699 121 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 CFHR1Q03591 330 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 NR0B2Q15466 257 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 CDKN3Q16667 212 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 ISXQ2M1V0 245 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 MYLK3Q32MK0 819 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 KLHDC7AQ5VTJ3 777 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 OTUD1Q5VV17 481 aaPredicted RBP13.52□□□□□ -0.25
HMGB3-204ENST00000448905 TAF3Q5VWG9 929 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 FAM131BQ86XD5 332 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 SLC22A18ASQ8N1D0 253 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 ZNF548Q8NEK5 533 aaPredicted RBP13.52□□□□□ -0.25
HMGB3-204ENST00000448905 WDR48Q8TAF3 677 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 LMX1AQ8TE12 382 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 KCNE4Q8WWG9 221 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 SCG3Q8WXD2 468 aaKnown RBP13.52□□□□□ -0.25
HMGB3-204ENST00000448905 CPA5Q8WXQ8 436 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 HIC2Q96JB3 615 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 CFAP57Q96MR6 1250 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 STK33Q9BYT3 514 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 SLC13A1Q9BZW2 595 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 MAGEH1Q9H213 219 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 TMEM59LQ9UK28 342 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 FCF1Q9Y324 198 aaKnown RBP13.52□□□□□ -0.25
HMGB3-204ENST00000448905 APC2O95996 2303 aa13.52□□□□□ -0.25
HMGB3-204ENST00000448905 ACACAQ13085 2346 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 EME2A4GXA9 379 aaPredicted RBP13.51□□□□□ -0.25
HMGB3-204ENST00000448905 ZSCAN5CA6NGD5 496 aaPredicted RBP13.51□□□□□ -0.25
HMGB3-204ENST00000448905 I6L893 689 aaPredicted RBP13.51□□□□□ -0.25
HMGB3-204ENST00000448905 KLK10O43240 276 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 PNMA6AP0CW24 399 aaPredicted RBP13.51□□□□□ -0.25
HMGB3-204ENST00000448905 MYF5P13349 255 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 RHOQP17081 205 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 ERCC5P28715 1186 aaPredicted RBP13.51□□□□□ -0.25
HMGB3-204ENST00000448905 SDC4P31431 198 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 FLT3P36888 993 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 MAPKAPK2P49137 400 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 ATP11AP98196 1134 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 FAXCQ5TGI0 409 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 ESRP1Q6NXG1 681 aaKnown RBP13.51□□□□□ -0.25
HMGB3-204ENST00000448905 ZNF677Q86XU0 584 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 ARL14Q8N4G2 192 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 DENND6BQ8NEG7 585 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 OR2AP1Q8NGE2 309 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 TM6SF2Q9BZW4 377 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 TMPRSS4Q9NRS4 437 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 ASXL3Q9C0F0 2248 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 MYLKQ15746 1914 aa13.51□□□□□ -0.25
HMGB3-204ENST00000448905 TMEM110-MUSTN1A8MSY1 372 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 RAMP2O60895 175 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 TCEA3O75764 348 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 GSRP00390 522 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 TPM2P07951 284 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 ANXA6P08133 673 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 UCHL3P15374 230 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 BLKP51451 505 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 PFN3P60673 137 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 ARF5P84085 180 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 NRG1Q02297 640 aaPredicted RBP13.5□□□□□ -0.25
HMGB3-204ENST00000448905 FGL2Q14314 439 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 DEFB133Q30KQ1 61 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 ARHGAP40Q5TG30 622 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 IGF2-ASQ6U949 168 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 GDPD4Q6W3E5 623 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 RBM44Q6ZP01 1051 aaKnown RBP13.5□□□□□ -0.25
HMGB3-204ENST00000448905 PARS2Q7L3T8 475 aaKnown RBP13.5□□□□□ -0.25
HMGB3-204ENST00000448905 EFL1Q7Z2Z2 1120 aaKnown RBP13.5□□□□□ -0.25
HMGB3-204ENST00000448905 ZNF354CQ86Y25 554 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 CASKIN2Q8WXE0 1202 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 ARHGEF2Q92974 986 aaKnown RBP13.5□□□□□ -0.25
HMGB3-204ENST00000448905 NAT6Q93015 286 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 TBATAQ96M53 351 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 SLC46A1Q96NT5 459 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 KLF6Q99612 283 aaPredicted RBP13.5□□□□□ -0.25
HMGB3-204ENST00000448905 GPR27Q9NS67 375 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 DNAI1Q9UI46 699 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 AJAP1Q9UKB5 411 aaPredicted RBP13.5□□□□□ -0.25
HMGB3-204ENST00000448905 DOLKQ9UPQ8 538 aa13.5□□□□□ -0.25
HMGB3-204ENST00000448905 COL5A1P20908 1838 aaPredicted RBP13.5□□□□□ -0.25
HMGB3-204ENST00000448905 SMG1Q96Q15 3661 aaKnown RBP13.5□□□□□ -0.25
HMGB3-204ENST00000448905 TMX2-CTNND1H3BSU7 103 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 RNF103O00237 685 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 RAD51BO15315 384 aa13.49□□□□□ -0.25
HMGB3-204ENST00000448905 BUB1O43683 1085 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms