RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PROX2Q3B8N5 592 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 POM121L1PQ3SYA9 428 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 TMEM259Q4ZIN3 620 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 ZNF805Q5CZA5 627 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 EFHC2Q5JST6 749 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 HES3Q5TGS1 186 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 OTUD1Q5VV17 481 aaPredicted RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 CDKAL1Q5VV42 579 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 LINGO4Q6UY18 593 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 KYAT3Q6YP21 454 aaKnown RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 Q6ZSR6 202 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 KANSL1Q7Z3B3 1105 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 SLFN11Q7Z7L1 901 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 PDZD3Q86UT5 571 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 PHF13Q86YI8 300 aaPredicted RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 RYBPQ8N488 228 aaPredicted RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 FAM181AQ8N9Y4 354 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 C3orf20Q8ND61 904 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 DENND6BQ8NEG7 585 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 OR7D4Q8NG98 312 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 OR2AP1Q8NGE2 309 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 TPCN2Q8NHX9 752 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 GRIN3AQ8TCU5 1115 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 HCAR2Q8TDS4 363 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 RXFP2Q8WXD0 754 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 CENPIQ92674 756 aaPredicted RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 NTAN1Q96AB6 310 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 TBC1D31Q96DN5 1066 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 VCPIP1Q96JH7 1222 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 EIF3CQ99613 913 aaKnown RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 NCAPGQ9BPX3 1015 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 NAT10Q9H0A0 1025 aaKnown RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 TNKS2Q9H2K2 1166 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 CATSPERBQ9H7T0 1116 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 METTL5Q9NRN9 209 aaKnown RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 FAM207AQ9NSI2 230 aaPredicted RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 TMEM248Q9NWD8 314 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 TAB2Q9NYJ8 693 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 NOCTQ9UK39 431 aaKnown RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 RAXQ9Y2V3 346 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 ANKRD36A6QL64 1941 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 LAMA5O15230 3695 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 SPTY2D1-AS1A0A0U1RR47 76 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 FAM149AA5PLN7 773 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 TMEM110-MUSTN1A8MSY1 372 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 I6L893 689 aaPredicted RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 KRIT1O00522 736 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 TPP1O14773 563 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 SNPHO15079 494 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 FGF10O15520 208 aaPredicted RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 SIGLEC6O43699 453 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 ZNF821O75541 412 aaPredicted RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 PIAS2O75928 621 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 IGSF6O95976 241 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 PAK4O96013 591 aaPredicted RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 UNGP13051 313 aaPredicted RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 PRLRP16471 622 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 FERP16591 822 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 GPD1P21695 349 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 ABCG1P45844 678 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 NUMBP49757 651 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 BLKP51451 505 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 ZNF135P52742 658 aaPredicted RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 ZNF143P52747 638 aaPredicted RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 THOP1P52888 689 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 JAM2P57087 298 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 ARF5P84085 180 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 FMO1Q01740 532 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 MYL5Q02045 173 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 UBXN1Q04323 297 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 ELP6Q0PNE2 266 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 DNAJC3Q13217 504 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 KRT31Q15323 416 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 CDO1Q16878 200 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 COL28A1Q2UY09 1125 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 MYLK3Q32MK0 819 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 PARP15Q460N3 678 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 CCDC14Q49A88 953 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 ZCCHC8Q6NZY4 707 aaKnown RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 C19orf48Q6RUI8 117 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 PTAR1Q7Z6K3 402 aaPredicted RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 TTC7BQ86TV6 843 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 PARGQ86W56 976 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 ZNF354CQ86Y25 554 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 SDR16C5Q8N3Y7 309 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 SLC25A45Q8N413 288 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 DCBLD1Q8N8Z6 715 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 CHST14Q8NCH0 376 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 LSM14AQ8ND56 463 aaKnown RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 OR13H1Q8NG92 308 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 ATL2Q8NHH9 583 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 WDR48Q8TAF3 677 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 FAM172AQ8WUF8 416 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 HNRNPLLQ8WVV9 542 aaKnown RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 SCG3Q8WXD2 468 aaKnown RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 FGF11Q92914 225 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 ARHGEF2Q92974 986 aaKnown RBP7.19□□□□□ -1.26
VPS41-208ENST00000448833 ARRDC3Q96B67 414 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 TBATAQ96M53 351 aa7.19□□□□□ -1.26
VPS41-208ENST00000448833 GDAP1L1Q96MZ0 367 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms