RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 TSTD2Q5T7W7 516 aa19.33■□□□□ 0.69
SDCBP-204ENST00000447182 PIWIL4Q7Z3Z4 852 aaKnown RBP19.33■□□□□ 0.69
SDCBP-204ENST00000447182 SLC41A1Q8IVJ1 513 aa19.33■□□□□ 0.69
SDCBP-204ENST00000447182 ZFP28Q8NHY6 868 aa19.33■□□□□ 0.69
SDCBP-204ENST00000447182 FAM81AQ8TBF8 368 aa19.33■□□□□ 0.69
SDCBP-204ENST00000447182 SENP6Q9GZR1 1112 aaPredicted RBP19.33■□□□□ 0.69
SDCBP-204ENST00000447182 KATNBL1Q9H079 304 aa19.33■□□□□ 0.69
SDCBP-204ENST00000447182 SUCOQ9UBS9 1254 aaKnown RBP19.33■□□□□ 0.69
SDCBP-204ENST00000447182 RRN3P2A6NIE6 340 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 SDHDO14521 159 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 RNASEH2AO75792 299 aaKnown RBP19.33■□□□□ 0.68
SDCBP-204ENST00000447182 TMCC1O94876 653 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 C8BP07358 591 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 DARSP14868 501 aaKnown RBP19.33■□□□□ 0.68
SDCBP-204ENST00000447182 ZNF26P17031 533 aaPredicted RBP19.33■□□□□ 0.68
SDCBP-204ENST00000447182 NR1H2P55055 460 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 DNAJB13P59910 316 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 GK3PQ14409 553 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 PPP2R5DQ14738 602 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 MYLK3Q32MK0 819 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 PKN3Q6P5Z2 889 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 RNF217Q8TC41 542 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 LENG1Q96BZ8 264 aaPredicted RBP19.33■□□□□ 0.68
SDCBP-204ENST00000447182 MARK4Q96L34 752 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 TSGA13Q96PP4 275 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 PRPF18Q99633 342 aaKnown RBP19.33■□□□□ 0.68
SDCBP-204ENST00000447182 NPAS2Q99743 824 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 ULBP1Q9BZM6 244 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 GRIP2Q9C0E4 1043 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 MRPL46Q9H2W6 279 aaKnown RBP19.33■□□□□ 0.68
SDCBP-204ENST00000447182 GOLGA2P5Q9HBQ8 144 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 NCKIPSDQ9NZQ3 722 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 APPL1Q9UKG1 709 aa19.33■□□□□ 0.68
SDCBP-204ENST00000447182 YJEFN3A6XGL0 299 aa19.32■□□□□ 0.68
SDCBP-204ENST00000447182 PGK1P00558 417 aa19.32■□□□□ 0.68
SDCBP-204ENST00000447182 JCHAINP01591 159 aa19.32■□□□□ 0.68
SDCBP-204ENST00000447182 STMN1P16949 149 aa19.32■□□□□ 0.68
SDCBP-204ENST00000447182 AVPR1AP37288 418 aa19.32■□□□□ 0.68
SDCBP-204ENST00000447182 CHSY3Q70JA7 882 aa19.32■□□□□ 0.68
SDCBP-204ENST00000447182 NXNL1Q96CM4 212 aa19.32■□□□□ 0.68
SDCBP-204ENST00000447182 TMA16Q96EY4 203 aaKnown RBP19.32■□□□□ 0.68
SDCBP-204ENST00000447182 MRPL1Q9BYD6 325 aaKnown RBP19.32■□□□□ 0.68
SDCBP-204ENST00000447182 MRM3Q9HC36 420 aaKnown RBP19.32■□□□□ 0.68
SDCBP-204ENST00000447182 RRN3Q9NYV6 651 aa19.32■□□□□ 0.68
SDCBP-204ENST00000447182 KLK14Q9P0G3 267 aa19.32■□□□□ 0.68
SDCBP-204ENST00000447182 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.32■□□□□ 0.68
SDCBP-204ENST00000447182 PCDHGA7Q9Y5G6 932 aa19.32■□□□□ 0.68
SDCBP-204ENST00000447182 ARHGAP10A1A4S6 786 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 GABRDO14764 452 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 FAM200BP0CF97 657 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 PGGT1BP53609 377 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 MAP3K7CLP57077 242 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 PPIL2Q13356 520 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 TRIM25Q14258 630 aaKnown RBP19.31■□□□□ 0.68
SDCBP-204ENST00000447182 IYDQ6PHW0 289 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 CEP97Q8IW35 865 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 CCDC117Q8IWD4 279 aaPredicted RBP19.31■□□□□ 0.68
SDCBP-204ENST00000447182 GALNT4Q8N4A0 578 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 OSMRQ99650 979 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 MRPL57Q9BQC6 102 aaKnown RBP19.31■□□□□ 0.68
SDCBP-204ENST00000447182 COLEC11Q9BWP8 271 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 FAM49AQ9H0Q0 323 aaPredicted RBP19.31■□□□□ 0.68
SDCBP-204ENST00000447182 CNGB3Q9NQW8 809 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 UBP1Q9NZI7 540 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 SARDHQ9UL12 918 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 AAR2Q9Y312 384 aaKnown RBP19.31■□□□□ 0.68
SDCBP-204ENST00000447182 FAM95CA0A1B0GW59 222 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 F9P00740 461 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 MMP3P08254 477 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 ATP6V1B1P15313 513 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 YBX3P16989 372 aaKnown RBP eCLIP19.31■□□□□ 0.68
SDCBP-204ENST00000447182 PSME3P61289 254 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 MGAT5BQ3V5L5 792 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 FASTKD5Q7L8L6 764 aaKnown RBP19.31■□□□□ 0.68
SDCBP-204ENST00000447182 MFSD6LQ8IWD5 586 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 CHERPQ8IWX8 916 aaKnown RBP19.31■□□□□ 0.68
SDCBP-204ENST00000447182 ANKRD13AQ8IZ07 590 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 MED10Q9BTT4 135 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 UNC93B1Q9H1C4 597 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 DDIT4Q9NX09 232 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 HACD3Q9P035 362 aa19.31■□□□□ 0.68
SDCBP-204ENST00000447182 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.3■□□□□ 0.68
SDCBP-204ENST00000447182 PSMC3P17980 439 aa19.3■□□□□ 0.68
SDCBP-204ENST00000447182 ARCN1P48444 511 aaKnown RBP19.3■□□□□ 0.68
SDCBP-204ENST00000447182 TXNL4AP83876 142 aaKnown RBP19.3■□□□□ 0.68
SDCBP-204ENST00000447182 STX5Q13190 355 aa19.3■□□□□ 0.68
SDCBP-204ENST00000447182 IL23RQ5VWK5 629 aa19.3■□□□□ 0.68
SDCBP-204ENST00000447182 CCNYL1Q8N7R7 359 aa19.3■□□□□ 0.68
SDCBP-204ENST00000447182 DUS3LQ96G46 650 aaKnown RBP19.3■□□□□ 0.68
SDCBP-204ENST00000447182 FAR2Q96K12 515 aa19.3■□□□□ 0.68
SDCBP-204ENST00000447182 ZNF597Q96LX8 424 aa19.3■□□□□ 0.68
SDCBP-204ENST00000447182 THEGQ9P2T0 379 aa19.3■□□□□ 0.68
SDCBP-204ENST00000447182 OR12D3Q9UGF7 316 aa19.3■□□□□ 0.68
SDCBP-204ENST00000447182 A0A087X1B8 175 aa19.3■□□□□ 0.68
SDCBP-204ENST00000447182 TMEM233B4DJY2 109 aa19.3■□□□□ 0.68
SDCBP-204ENST00000447182 ADM5C9JUS6 153 aa19.3■□□□□ 0.68
SDCBP-204ENST00000447182 NCAM1P13591 858 aa19.3■□□□□ 0.68
SDCBP-204ENST00000447182 KPNA2P52292 529 aaKnown RBP19.3■□□□□ 0.68
SDCBP-204ENST00000447182 COG7P83436 770 aa19.3■□□□□ 0.68
SDCBP-204ENST00000447182 RHDQ02161 417 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms