RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 TBX10O75333 385 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 HNRNPLP14866 589 aaKnown RBP eCLIP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 MAPK1P28482 360 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 IDH3AP50213 366 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 ZNF132P52740 706 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 GAD2Q05329 585 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 FSTL4Q6MZW2 842 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 RNF180Q86T96 592 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 TMEM110Q86TL2 294 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 FAM126BQ8IXS8 530 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 ZNF526Q8TF50 670 aaPredicted RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 NDNQ99608 321 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 OSBPL11Q9BXB4 747 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 NUDT5Q9UKK9 219 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 PCDHB7Q9Y5E2 793 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 SPDYE5A6NIY4 337 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 FAM159BA6NKW6 160 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 ZNF839A8K0R7 811 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 KDM1AO60341 852 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 USP2O75604 605 aaPredicted RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 DDX5P17844 614 aaKnown RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 ARHGEF7Q14155 803 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 VWA5B1Q5TIE3 1220 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 DSELQ8IZU8 1212 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 LPCAT1Q8NF37 534 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 METTL6Q8TCB7 284 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 PTCD2Q8WV60 388 aaKnown RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 SNX27Q96L92 541 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 GATA5Q9BWX5 397 aaPredicted RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 CBX4O00257 560 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 VCLP18206 1134 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 PCYT1AP49585 367 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 CLK1P49759 484 aaKnown RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 MAD2L1Q13257 205 aaPredicted RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 SYTL3Q4VX76 610 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 ARL13AQ5H913 290 aaPredicted RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 NOL9Q5SY16 702 aaKnown RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 ZYG11AQ6WRX3 759 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 TMEM192Q8IY95 271 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 TAGAPQ8N103 731 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 B4GALNT2Q8NHY0 566 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 MFSD3Q96ES6 412 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 LENG8Q96PV6 779 aaPredicted RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 BTBD9Q96Q07 612 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 NKX1-2Q9UD57 310 aaPredicted RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 PRKAG3Q9UGI9 489 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 COL2A1P02458 1487 aaPredicted RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 BTN3A1O00481 513 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 UGT1A9O60656 530 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 CSPG5O95196 566 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 RTN3O95197 1032 aaPredicted RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 WNT3AP56704 352 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 CDK18Q07002 472 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 ELAVL2Q12926 359 aaKnown RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 DCTN2Q13561 401 aaKnown RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 LIN52Q52LA3 116 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 PGAM4Q8N0Y7 254 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 CNTD1Q8N815 330 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 DGCR14Q96DF8 476 aaKnown RBP16.81■□□□□ 0.28
TCOF1-206ENST00000445265 UGT1A7Q9HAW7 530 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 UGT1A10Q9HAW8 530 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 UGT1A8Q9HAW9 530 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 IPPQ9Y573 584 aa16.81■□□□□ 0.28
TCOF1-206ENST00000445265 PSEN1P49768 467 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 MOGSQ13724 837 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 SLC39A12Q504Y0 691 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 SLC44A4Q53GD3 710 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 OTUD3Q5T2D3 398 aaPredicted RBP16.8■□□□□ 0.28
TCOF1-206ENST00000445265 USP50Q70EL3 339 aaPredicted RBP16.8■□□□□ 0.28
TCOF1-206ENST00000445265 SNRNP27Q8WVK2 155 aaKnown RBP16.8■□□□□ 0.28
TCOF1-206ENST00000445265 RNF145Q96MT1 663 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 ZNF556Q9HAH1 456 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 SCHIP1Q9P0W5 487 aaPredicted RBP16.8■□□□□ 0.28
TCOF1-206ENST00000445265 SLC7A8Q9UHI5 535 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 ANAPC2Q9UJX6 822 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 FZD10Q9ULW2 581 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 ATG7O95352 703 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 FGFR3P22607 806 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 CCNG1P51959 295 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 GLT6D1Q7Z4J2 308 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 CLYBLQ8N0X4 340 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 CHCHD3Q9NX63 227 aaKnown RBP16.8■□□□□ 0.28
TCOF1-206ENST00000445265 TRPM5Q9NZQ8 1165 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 VWA7Q9Y334 891 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 CAPN8A6NHC0 703 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 CXorf49A8MYA2 514 aaPredicted RBP16.8■□□□□ 0.28
TCOF1-206ENST00000445265 PEX10O60683 326 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 LGR5O75473 907 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 RHOAP61586 193 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 BNIP2Q12982 314 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 NKAPQ8N5F7 415 aaKnown RBP16.8■□□□□ 0.28
TCOF1-206ENST00000445265 MAGED4Q96JG8 741 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 EBF4Q9BQW3 602 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 ZYG11BQ9C0D3 744 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 GOLGA2P5Q9HBQ8 144 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 MAN1A2O60476 641 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 SMNDC1O75940 238 aaKnown RBP eCLIP16.8■□□□□ 0.28
TCOF1-206ENST00000445265 PRKCHP24723 683 aa16.8■□□□□ 0.28
TCOF1-206ENST00000445265 GLUD2P49448 558 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms