RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TAF5Q15542 800 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 SAMD4BQ5PRF9 694 aaKnown RBP17.35■□□□□ 0.37
PTPRF-209ENST00000438120 PTF1AQ7RTS3 328 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.35■□□□□ 0.37
PTPRF-209ENST00000438120 UROC1Q96N76 676 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 NXF3Q9H4D5 531 aaKnown RBP17.35■□□□□ 0.37
PTPRF-209ENST00000438120 GOLGA2P5Q9HBQ8 144 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 MAP2P11137 1827 aaKnown RBP17.35■□□□□ 0.37
PTPRF-209ENST00000438120 BMP6P22004 513 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 MAP2K5Q13163 448 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 PTPRNQ16849 979 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 ARMC4Q5T2S8 1044 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 ZNF605Q86T29 641 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 ZDHHC13Q8IUH4 622 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 TNS4Q8IZW8 715 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 PGM2Q96G03 612 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 ADI1Q9BV57 179 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 MYL12BO14950 172 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 BCL10O95999 233 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 TAS2R40P59535 323 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 SP3Q02447 781 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 DGCR6Q14129 220 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 ZNF57Q68EA5 555 aaPredicted RBP17.35■□□□□ 0.37
PTPRF-209ENST00000438120 OR52K2Q8NGK3 314 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 SLC4A5Q9BY07 1137 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 REXO4Q9GZR2 422 aaKnown RBP17.35■□□□□ 0.37
PTPRF-209ENST00000438120 E7ENQ6 273 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 OR6A2O95222 327 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 PRKCIP41743 596 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 MAGEA10P43363 369 aaPredicted RBP17.35■□□□□ 0.37
PTPRF-209ENST00000438120 MSLNQ13421 630 aaPredicted RBP17.35■□□□□ 0.37
PTPRF-209ENST00000438120 KRT77Q7Z794 578 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 FAM20CQ8IXL6 584 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 CFAP52Q8N1V2 620 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 NDUFA13Q9P0J0 144 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 PCDHGA4Q9Y5G9 962 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 NTSP30990 170 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 CES5AQ6NT32 575 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 SAPCD2Q86UD0 394 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 RORBQ92753 470 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 HSFY1Q96LI6 401 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 ADAM30Q9UKF2 790 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 MYL12AP19105 171 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 PIK3CGP48736 1102 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 TRIM32Q13049 653 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 CDYL2Q8N8U2 506 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 FAM45AQ8TCE6 357 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 MAGEC3Q8TD91 643 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 MPP4Q96JB8 637 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 KLHL5Q96PQ7 755 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 CYP3A7-CYP3A51PA0A087WV96 503 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 CYP3A7P24462 503 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 FAM124AQ86V42 546 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 MAGEE2Q8TD90 523 aaPredicted RBP17.34■□□□□ 0.37
PTPRF-209ENST00000438120 LRRC39Q96DD0 335 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 ATP13A3Q9H7F0 1226 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 TNPO3Q9Y5L0 923 aaKnown RBP17.34■□□□□ 0.37
PTPRF-209ENST00000438120 CABYRO75952 493 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 CLYBLQ8N0X4 340 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 DHRSXQ8N5I4 330 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 SPATA31C2B4DYI2 1134 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 SPATA31C1P0DKV0 1188 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 IDH2P48735 452 aaKnown RBP17.34■□□□□ 0.37
PTPRF-209ENST00000438120 SMAD3P84022 425 aaKnown RBP17.34■□□□□ 0.37
PTPRF-209ENST00000438120 GCNT7Q6ZNI0 430 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 MBOAT7Q96N66 472 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 ASB2Q96Q27 587 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 VWDEQ8N2E2 1590 aa17.34■□□□□ 0.37
PTPRF-209ENST00000438120 ATXN2Q99700 1313 aaKnown RBP17.33■□□□□ 0.37
PTPRF-209ENST00000438120 SLC15A5A6NIM6 579 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 TSPAN19P0C672 248 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 ERCC2P18074 760 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 CDC25CP30307 473 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 TSNQ15631 228 aaKnown RBP17.33■□□□□ 0.37
PTPRF-209ENST00000438120 PDZK1Q5T2W1 519 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 CACTIN-AS1Q8N1I8 211 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 C1orf50Q9BV19 199 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 REEP1Q9H902 201 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 NDUFS2O75306 463 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 PIK3R1P27986 724 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 RPL38P63173 70 aaKnown RBP17.33■□□□□ 0.37
PTPRF-209ENST00000438120 UBAP2LQ14157 1087 aaKnown RBP17.33■□□□□ 0.37
PTPRF-209ENST00000438120 USP41Q3LFD5 358 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 ZIK1Q3SY52 487 aaPredicted RBP17.33■□□□□ 0.37
PTPRF-209ENST00000438120 SIX5Q8N196 739 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 ARHGEF3Q9NR81 526 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 KCNK4Q9NYG8 393 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 DAPK2Q9UIK4 370 aa17.33■□□□□ 0.37
PTPRF-209ENST00000438120 GRIA3P42263 894 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 NOMO3P69849 1222 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 TRIQKQ629K1 86 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 PLPPR4Q7Z2D5 763 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 TMEM199Q8N511 208 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 NKAPQ8N5F7 415 aaKnown RBP17.33■□□□□ 0.36
PTPRF-209ENST00000438120 B3GNT5Q9BYG0 378 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 HNRNPLP14866 589 aaKnown RBP eCLIP17.33■□□□□ 0.36
PTPRF-209ENST00000438120 NUP62P37198 522 aaPredicted RBP17.33■□□□□ 0.36
PTPRF-209ENST00000438120 AUHQ13825 339 aaKnown RBP17.33■□□□□ 0.36
PTPRF-209ENST00000438120 FAM187BQ17R55 369 aa17.33■□□□□ 0.36
PTPRF-209ENST00000438120 EXOC3L1Q86VI1 746 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms