RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SLC13A5Q86YT5 568 aaPredicted RBP12.61□□□□□ -0.39
USP40-205ENST00000430158 MMAAQ8IVH4 418 aaKnown RBP12.61□□□□□ -0.39
USP40-205ENST00000430158 AADATQ8N5Z0 425 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 CNTD1Q8N815 330 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 OR2AP1Q8NGE2 309 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 ACTL9Q8TC94 416 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.61□□□□□ -0.39
USP40-205ENST00000430158 SIPA1Q96FS4 1042 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 WDR24Q96S15 920 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 TPSD1Q9BZJ3 242 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 TM6SF2Q9BZW4 377 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 BRD8Q9H0E9 1235 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 PABPC3Q9H361 631 aaKnown RBP12.61□□□□□ -0.39
USP40-205ENST00000430158 SP110Q9HB58 689 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 HECAQ9UBI9 543 aaPredicted RBP12.61□□□□□ -0.39
USP40-205ENST00000430158 SEPT3Q9UH03 358 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 MBD1Q9UIS9 605 aaPredicted RBP12.61□□□□□ -0.39
USP40-205ENST00000430158 R3HDM2Q9Y2K5 976 aaKnown RBP12.61□□□□□ -0.39
USP40-205ENST00000430158 PCDHGA2Q9Y5H1 932 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 MYO15AQ9UKN7 3530 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 TNRC6BQ9UPQ9 1833 aaKnown RBP12.6□□□□□ -0.39
USP40-205ENST00000430158 ZNF292O60281 2723 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 IGHV1OR15-9A0A0B4J2B8 117 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 ENC1O14682 589 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 MID1O15344 667 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 GJB3O75712 270 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 POP4O95707 220 aaKnown RBP12.6□□□□□ -0.39
USP40-205ENST00000430158 ATP1A1P05023 1023 aaKnown RBP12.6□□□□□ -0.39
USP40-205ENST00000430158 GKP32189 559 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 SLC8A1P32418 973 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 TPMTP51580 245 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 RHOAP61586 193 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 WASHC5Q12768 1159 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 ZBTB17Q13105 803 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 SRSF5Q13243 272 aaKnown RBP12.6□□□□□ -0.39
USP40-205ENST00000430158 XRCC4Q13426 336 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 CST6Q15828 149 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 HS1BP3Q53T59 392 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 ODF2Q5BJF6 829 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 B4GALNT4Q76KP1 1039 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 ZNF354CQ86Y25 554 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 CCDC13Q8IYE1 715 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 PIP4K2CQ8TBX8 421 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 RLN3Q8WXF3 142 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 OR8D1Q8WZ84 308 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 P3H4Q92791 437 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 ARRDC3Q96B67 414 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 QKIQ96PU8 341 aaKnown RBP eCLIP12.6□□□□□ -0.39
USP40-205ENST00000430158 MGME1Q9BQP7 344 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 HEPHQ9BQS7 1158 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 CPEB1Q9BZB8 566 aaKnown RBP12.6□□□□□ -0.39
USP40-205ENST00000430158 USP29Q9HBJ7 922 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 SERGEFQ9UGK8 458 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 RAPGEFL1Q9UHV5 662 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 ATP8A1Q9Y2Q0 1164 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 CABIN1Q9Y6J0 2220 aa12.6□□□□□ -0.39
USP40-205ENST00000430158 LRRK1Q38SD2 2015 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 TTC24A2A3L6 582 aaPredicted RBP12.59□□□□□ -0.39
USP40-205ENST00000430158 KCNK3O14649 394 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 KIF5CO60282 957 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 LEFTY1O75610 366 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 TJP3O95049 919 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 CCNB1P14635 433 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 C5AR1P21730 350 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 BCKDHBP21953 392 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 RENBPP51606 427 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 PTPN5P54829 565 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 SNRPD1P62314 119 aaKnown RBP12.59□□□□□ -0.39
USP40-205ENST00000430158 OTUD4Q01804 1114 aaKnown RBP12.59□□□□□ -0.39
USP40-205ENST00000430158 NIPAL4Q0D2K0 466 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 MARC1Q5VT66 337 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 TIGD7Q6NT04 549 aaPredicted RBP12.59□□□□□ -0.39
USP40-205ENST00000430158 NCEH1Q6PIU2 408 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 USP30Q70CQ3 517 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 BZW1Q7L1Q6 419 aaKnown RBP12.59□□□□□ -0.39
USP40-205ENST00000430158 SRLQ86TD4 932 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 RASGEF1CQ8N431 466 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 FAM160A2Q8N612 972 aaPredicted RBP12.59□□□□□ -0.39
USP40-205ENST00000430158 OR6K2Q8NGY2 324 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 SLC35B2Q8TB61 432 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 ARRDC2Q8TBH0 407 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 GAB3Q8WWW8 586 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 PRCCQ92733 491 aaPredicted RBP12.59□□□□□ -0.39
USP40-205ENST00000430158 HAUS1Q96CS2 278 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 LRIG1Q96JA1 1093 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 EXOC2Q96KP1 924 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 GDAP1L1Q96MZ0 367 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 C10orf88Q9H8K7 445 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 WSB2Q9NYS7 404 aaPredicted RBP12.59□□□□□ -0.39
USP40-205ENST00000430158 PLA2G2EQ9NZK7 142 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 IL36AQ9UHA7 158 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 AMACRQ9UHK6 382 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 EVLQ9UI08 416 aaPredicted RBP12.59□□□□□ -0.39
USP40-205ENST00000430158 SCML1Q9UN30 329 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 ARIH1Q9Y4X5 557 aaPredicted RBP12.59□□□□□ -0.39
USP40-205ENST00000430158 PCDHGA4Q9Y5G9 962 aa12.59□□□□□ -0.39
USP40-205ENST00000430158 TSPAN11A1L157 253 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 HACD1B0YJ81 288 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 KCNK1O00180 336 aa12.58□□□□□ -0.4
USP40-205ENST00000430158 PLK4O00444 970 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms