RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 ZFYVE19Q96K21 471 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 POLR1EQ9GZS1 481 aaKnown RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 XAB2Q9HCS7 855 aaKnown RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 SOHLH2Q9NX45 425 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 SLC24A2Q9UI40 661 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 EP300Q09472 2414 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 TMCC1O94876 653 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 DSG1Q02413 1049 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 PRKCQQ04759 706 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 GPR17Q13304 367 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 CYLC2Q14093 348 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 SGO1Q5FBB7 561 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 KATNAL2Q8IYT4 538 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 BTN2A3PQ96KV6 586 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 ANKRD27Q96NW4 1050 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 TMEM120AQ9BXJ8 343 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 CD274Q9NZQ7 290 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 ARMCX1Q9P291 453 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 HECAQ9UBI9 543 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 BAG5Q9UL15 447 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 PCDHA11Q9Y5I1 949 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 CACNB4O00305 520 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 SMNDC1O75940 238 aaKnown RBP eCLIP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 HOXB8P17481 243 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 TGM2P21980 687 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 PTPN4P29074 926 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 GPR15P49685 360 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 UGP2Q16851 508 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 SPRED3Q2MJR0 410 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 LRRC74BQ6ZQY2 392 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 FITM2Q8N6M3 262 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 SNX31Q8N9S9 440 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 DQX1Q8TE96 717 aaKnown RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 TOP1MTQ969P6 601 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 CXorf40BQ96DE9 158 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 MYH3P11055 1940 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 ACSL4O60488 711 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 CTPS1P17812 591 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 MATKP42679 507 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 ITPRIPL2Q3MIP1 535 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 LCA5Q86VQ0 697 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 C2orf15Q8WU43 125 aaKnown RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 FAM210AQ96ND0 272 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 ZNF570Q96NI8 536 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 SEMA3CQ99985 751 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 TNKS2Q9H2K2 1166 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 ABCB8Q9NUT2 735 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 UTP6Q9NYH9 597 aaKnown RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 CXXC1Q9P0U4 656 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 TRMT6Q9UJA5 497 aaKnown RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 NOCTQ9UK39 431 aaKnown RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 CNOT1A5YKK6 2376 aaKnown RBP10.77□□□□□ -0.68
TCOF1-204ENST00000427724 A0A1W2PPM1 405 aa10.77□□□□□ -0.68
TCOF1-204ENST00000427724 C9IYK1 514 aa10.77□□□□□ -0.68
TCOF1-204ENST00000427724 INPP4BO15327 924 aa10.77□□□□□ -0.68
TCOF1-204ENST00000427724 ZNF623O75123 536 aa10.77□□□□□ -0.68
TCOF1-204ENST00000427724 CILPO75339 1184 aa10.77□□□□□ -0.68
TCOF1-204ENST00000427724 CLDN11O75508 207 aa10.77□□□□□ -0.68
TCOF1-204ENST00000427724 ATG7O95352 703 aa10.77□□□□□ -0.68
TCOF1-204ENST00000427724 SOWAHAQ2M3V2 549 aa10.77□□□□□ -0.68
TCOF1-204ENST00000427724 CCDC92Q53HC0 331 aaPredicted RBP10.77□□□□□ -0.68
TCOF1-204ENST00000427724 RNF19BQ6ZMZ0 732 aa10.77□□□□□ -0.68
TCOF1-204ENST00000427724 ACDQ96AP0 544 aa10.77□□□□□ -0.68
TCOF1-204ENST00000427724 KLHL5Q96PQ7 755 aa10.77□□□□□ -0.68
TCOF1-204ENST00000427724 NHSQ6T4R5 1651 aa10.77□□□□□ -0.68
TCOF1-204ENST00000427724 LIASO43766 372 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 NBNO60934 754 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 USP12O75317 370 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 MYO1DO94832 1006 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 ELFN1P0C7U0 828 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 CST5P28325 142 aaPredicted RBP10.77□□□□□ -0.69
TCOF1-204ENST00000427724 VIPR2P41587 438 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 SPDYAQ5MJ70 313 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 TTC39BQ5VTQ0 682 aaPredicted RBP10.77□□□□□ -0.69
TCOF1-204ENST00000427724 C6orf89Q6UWU4 347 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 LRRN4Q8WUT4 740 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 PIGKQ92643 395 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 PAAF1Q9BRP4 392 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 ELAC1Q9H777 363 aaKnown RBP10.77□□□□□ -0.69
TCOF1-204ENST00000427724 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.77□□□□□ -0.69
TCOF1-204ENST00000427724 COL22A1Q8NFW1 1626 aaPredicted RBP10.77□□□□□ -0.69
TCOF1-204ENST00000427724 TJP1Q07157 1748 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 KRT36O76013 467 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 ERCC2P18074 760 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 ECHS1P30084 290 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 NOMO3P69849 1222 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 CNGA3Q16281 694 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 USP39Q53GS9 565 aaKnown RBP10.77□□□□□ -0.69
TCOF1-204ENST00000427724 AARS2Q5JTZ9 985 aaKnown RBP10.77□□□□□ -0.69
TCOF1-204ENST00000427724 C9orf50Q5SZB4 431 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 CIR1Q86X95 450 aaPredicted RBP10.77□□□□□ -0.69
TCOF1-204ENST00000427724 CMTM8Q8IZV2 173 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 SGF29Q96ES7 293 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 MPP4Q96JB8 637 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 VCPIP1Q96JH7 1222 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 MLPHQ9BV36 600 aaPredicted RBP10.77□□□□□ -0.69
TCOF1-204ENST00000427724 DPEP2Q9H4A9 486 aa10.77□□□□□ -0.69
TCOF1-204ENST00000427724 MTMR11A4FU01 709 aa10.76□□□□□ -0.69
TCOF1-204ENST00000427724 C4BPAP04003 597 aaKnown RBP10.76□□□□□ -0.69
TCOF1-204ENST00000427724 HOXB2P14652 356 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms