RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 BAHCC1Q9P281 2608 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 C16orf96A6NNT2 1141 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 K7ESM1 405 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 NEMP1O14524 444 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 UGT2B4P06133 528 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 PLEKP08567 350 aaPredicted RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 RHOQP17081 205 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 RFC1P35251 1148 aaPredicted RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 RPS21P63220 83 aaKnown RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 SLC20A2Q08357 652 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 CCDC15Q0P6D6 951 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 CCDC173Q0VFZ6 552 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 SYCP1Q15431 976 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 CRTC1Q6UUV9 634 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 RBFAQ8N0V3 343 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 ENOX1Q8TC92 643 aaKnown RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 TBC1D31Q96DN5 1066 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 PCMTD1Q96MG8 357 aaPredicted RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 KLHL32Q96NJ5 620 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 NOL6Q9H6R4 1146 aaKnown RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 LMBRD1Q9NUN5 540 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 SEPT11Q9NVA2 429 aaKnown RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 SIK3Q9Y2K2 1263 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 MYLKQ15746 1914 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 URB1O60287 2271 aaKnown RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 ACACAQ13085 2346 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 OPA1O60313 960 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 MPOP05164 745 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 CDK4P11802 303 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 UNGP13051 313 aaPredicted RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 SGCGQ13326 291 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 ILKQ13418 452 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 C1orf61Q13536 156 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 PDE1CQ14123 709 aaPredicted RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 RTP5Q14D33 572 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 POLD3Q15054 466 aaPredicted RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 TCEA2Q15560 299 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 CLEC16AQ2KHT3 1053 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 DEFB133Q30KQ1 61 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 ARL13BQ3SXY8 428 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 HS1BP3Q53T59 392 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 SMYD5Q6GMV2 418 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 KIAA1161Q6NSJ0 714 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 SCYL2Q6P3W7 929 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 WDR59Q6PJI9 974 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 KYAT3Q6YP21 454 aaKnown RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 ZNF677Q86XU0 584 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 DCBLD1Q8N8Z6 715 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 ZNF548Q8NEK5 533 aaPredicted RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 LMX1AQ8TE12 382 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 RFFLQ8WZ73 363 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 KLF6Q99612 283 aaPredicted RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 SELENOOQ9BVL4 669 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 NRSN2Q9GZP1 204 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 TMEM248Q9NWD8 314 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 ADAM22Q9P0K1 906 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 IPO11Q9UI26 975 aaKnown RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 PNMA8BQ9ULN7 279 aaPredicted RBP11.76□□□□□ -0.53
USP4-204ENST00000416417 HS3ST3A1Q9Y663 406 aa11.76□□□□□ -0.53
USP4-204ENST00000416417 DOCK4Q8N1I0 1966 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 ARID1BQ8NFD5 2236 aaPredicted RBP11.75□□□□□ -0.53
USP4-204ENST00000416417 SPTY2D1-AS1A0A0U1RR47 76 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 CPED1A4D0V7 1026 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 FPGTO14772 594 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 SCAMP1O15126 338 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 INSIG1O15503 277 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 CCP110O43303 1012 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 BUB1O43683 1085 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 MMP20O60882 483 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 RAMP2O60895 175 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 TMCC1O94876 653 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 KRT3P12035 628 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 CKMT1AP12532 417 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 GPD1P21695 349 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 STAT1P42224 750 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 PTPN9P43378 593 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 MAPKAPK2P49137 400 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 COPB1P53618 953 aaKnown RBP11.75□□□□□ -0.53
USP4-204ENST00000416417 EIF2B5Q13144 721 aaKnown RBP11.75□□□□□ -0.53
USP4-204ENST00000416417 CDKN3Q16667 212 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 MYLK3Q32MK0 819 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 ZNF805Q5CZA5 627 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 FKBP15Q5T1M5 1219 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 ACBD5Q5T8D3 534 aaPredicted RBP11.75□□□□□ -0.53
USP4-204ENST00000416417 NYAP1Q6ZVC0 841 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 ARCQ7LC44 396 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 STRADAQ7RTN6 431 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 VPS36Q86VN1 386 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 DNAAF5Q86Y56 855 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 OR2AP1Q8NGE2 309 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 CENPIQ92674 756 aaPredicted RBP11.75□□□□□ -0.53
USP4-204ENST00000416417 EXOC2Q96KP1 924 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 WRAP53Q9BUR4 548 aaKnown RBP11.75□□□□□ -0.53
USP4-204ENST00000416417 C1QTNF2Q9BXJ5 285 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 GPR27Q9NS67 375 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 GPATCH2LQ9NWQ4 482 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 NLGN3Q9NZ94 848 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 COQ6Q9Y2Z9 468 aa11.75□□□□□ -0.53
USP4-204ENST00000416417 TDRD6O60522 2096 aaKnown RBP11.74□□□□□ -0.53
USP4-204ENST00000416417 KDELR3O43731 214 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms