RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TDRPQ86YL5 185 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 GPALPP1Q8IXQ4 340 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 PHACTR4Q8IZ21 702 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 LRRC52Q8N7C0 313 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 FAM81AQ8TBF8 368 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 EZH1Q92800 747 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 ZHX1-C8orf76Q96EF9 292 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 SERAC1Q96JX3 654 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 LACRTQ9GZZ8 138 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 POMKQ9H5K3 350 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 XPNPEP3Q9NQH7 507 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 TNFSF13BQ9Y275 285 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 COL1A2P08123 1366 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 FAM205CA6NFA0 338 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 ANKDD1BA6NHY2 528 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 STK25O00506 426 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 ATMINO43313 823 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 SLC37A4O43826 429 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 MSCO60682 206 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 PGM3O95394 542 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 ALDH2P05091 517 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 COX7A2P14406 83 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 SDC2P34741 201 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 AVPR1AP37288 418 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 FEN1P39748 380 aaKnown RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 CCT3P49368 545 aaKnown RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 NME5P56597 212 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 SPIDRQ14159 915 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 OVOS1Q6IE37 1185 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 CYP20A1Q6UW02 462 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 TMPRSS11AQ6ZMR5 421 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 UNC5BQ8IZJ1 945 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 TMIEQ8NEW7 156 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 CERS2Q96G23 380 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 DNAJC18Q9H819 358 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 CMTM6Q9NX76 183 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 GALNT8Q9NY28 637 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 TSPAN16Q9UKR8 245 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 SCAF8Q9UPN6 1271 aaKnown RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 PEX16Q9Y5Y5 336 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 H3BN98 237 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 SNAP23O00161 211 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 B3GAT3O94766 335 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 PIGNO95427 931 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 LTFP02788 710 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 HMBSP08397 361 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 ANPEPP15144 967 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 BMP7P18075 431 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 RARRES1P49788 294 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 SNRPD1P62314 119 aaKnown RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 PTSQ03393 145 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 SULT2A1Q06520 285 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 IQSEC1Q6DN90 963 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF470Q6ECI4 717 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 CHST15Q7LFX5 561 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 GLT6D1Q7Z4J2 308 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 PGBD3Q8N328 593 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 NR4A3Q92570 626 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 ROPN1LQ96C74 230 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 GJD4Q96KN9 370 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 TDRD1Q9BXT4 1180 aaKnown RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 LHX5Q9H2C1 402 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 EHD3Q9NZN3 535 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 PRKAG3Q9UGI9 489 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 LIASO43766 372 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 IPO13O94829 963 aaKnown RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 FGRP09769 529 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 HSMCR30P0CW71 290 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 RAB10P61026 200 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 GTF2BQ00403 316 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 LAMTOR4Q0VGL1 99 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 SGCGQ13326 291 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 CRY1Q16526 586 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 MAPKAPK3Q16644 382 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 CBWD6Q4V339 395 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 DUPD1Q68J44 220 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 USP49Q70CQ1 688 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 ANKRD23Q86SG2 305 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 OAFQ86UD1 273 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 TMC8Q8IU68 726 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 FAM20CQ8IXL6 584 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 PEX5LQ8IYB4 626 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 C7orf57Q8NEG2 295 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 IDI2Q9BXS1 227 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 ELP3Q9H9T3 547 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 ATP13A1Q9HD20 1204 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 SEMA3GQ9NS98 782 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 IKZF3Q9UKT9 509 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 MRPS33Q9Y291 106 aaKnown RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 SIK3Q9Y2K2 1263 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 WBP11Q9Y2W2 641 aaKnown RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 HBS1LQ9Y450 684 aaKnown RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 POLR1AO95602 1720 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 CCL15-CCL14A0A0B4J2E2 113 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 H3BNH8 94 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 CCNE2O96020 404 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 TYMPP19971 482 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 CDH3P22223 829 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 DSG3P32926 999 aa6.15□□□□□ -1.42
SCN1A-203ENST00000409050 CHKAP35790 457 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms