RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ITGA9Q13797 1035 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 FASTKD3Q14CZ7 662 aaKnown RBP9.2□□□□□ -0.94
LIG4-202ENST00000405925 RHBDF2Q6PJF5 856 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 CHST9Q7L1S5 443 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 TNS4Q8IZW8 715 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 SLC35B2Q8TB61 432 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 ERP27Q96DN0 273 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 ZNF446Q9NWS9 450 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 EPS15L1Q9UBC2 864 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 TMEM59LQ9UK28 342 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 C5orf60A6NFR6 353 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 ABLIM1O14639 778 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 PRPF4O43172 522 aaKnown RBP eCLIP9.2□□□□□ -0.941e-6■■■■□ 19.3
LIG4-202ENST00000405925 MAP3K13O43283 966 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 TMCC1O94876 653 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 BGNP21810 368 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 GABRB2P47870 512 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 C16orf46Q6P387 395 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 TRMT11Q7Z4G4 463 aaKnown RBP9.2□□□□□ -0.94
LIG4-202ENST00000405925 TRIM48Q8IWZ4 208 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 MREGQ8N565 214 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 ILKAPQ9H0C8 392 aaPredicted RBP9.2□□□□□ -0.94
LIG4-202ENST00000405925 OSBPL2Q9H1P3 480 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 GBA3Q9H227 469 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 CXCL16Q9H2A7 254 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 NMUR1Q9HB89 426 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 FCF1Q9Y324 198 aaKnown RBP9.2□□□□□ -0.94
LIG4-202ENST00000405925 HS3ST4Q9Y661 456 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 TNS1Q9HBL0 1735 aaKnown RBP9.2□□□□□ -0.94
LIG4-202ENST00000405925 MAP3K7O43318 606 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 ANP32DO95626 131 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 FAM107AO95990 144 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 KCNA4P22459 653 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 SERPINB4P48594 390 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 NDST2P52849 883 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 WDR5P61964 334 aaKnown RBP9.2□□□□□ -0.94
LIG4-202ENST00000405925 ZBTB6Q15916 424 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 GRAMD4Q6IC98 578 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 TRAPPC5Q8IUR0 188 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 LINC01465Q8N7H1 131 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 TMEM159Q96B96 161 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 RIPOR3Q96MK2 946 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 SERPINI1Q99574 410 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 NDNQ99608 321 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 ZCCHC2Q9C0B9 1178 aaKnown RBP9.2□□□□□ -0.94
LIG4-202ENST00000405925 LRRC4CQ9HCJ2 640 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 ABCB8Q9NUT2 735 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 MTRRQ9UBK8 725 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 NCKAP1Q9Y2A7 1128 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 RAI2Q9Y5P3 530 aa9.2□□□□□ -0.94
LIG4-202ENST00000405925 EVPLQ92817 2033 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 MAP2K7O14733 419 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 AP2A1O95782 977 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 GUCA1CO95843 209 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 CA3P07451 260 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 TPSB2P20231 275 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 PTGIRP43119 386 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 CRYMQ14894 314 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 EFTUD2Q15029 972 aaKnown RBP eCLIP9.19□□□□□ -0.94
LIG4-202ENST00000405925 TPSAB1Q15661 275 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 PTPRNQ16849 979 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 TSNAXIP1Q2TAA8 658 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 C6orf10Q5SRN2 563 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 NCBP2-AS2Q69YL0 99 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 MARK2Q7KZI7 788 aaKnown RBP9.19□□□□□ -0.94
LIG4-202ENST00000405925 RPAINQ86UA6 219 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 PHACTR4Q8IZ21 702 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 KIRREL3Q8IZU9 778 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 CPA6Q8N4T0 437 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 MYO19Q96H55 970 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 APOPT1Q96IL0 206 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 SEC16BQ96JE7 1060 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 TEKT5Q96M29 485 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 MYOCQ99972 504 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 SLC25A51Q9H1U9 297 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.19□□□□□ -0.94
LIG4-202ENST00000405925 IL1RAPL1Q9NZN1 696 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 PCDHA11Q9Y5I1 949 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 GSTA4O15217 222 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 NDST3O95803 873 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 ENO1P06733 434 aaKnown RBP9.19□□□□□ -0.94
LIG4-202ENST00000405925 GJA8P48165 433 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 TEAD2Q15562 447 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 RNASEH2BQ5TBB1 312 aaKnown RBP9.19□□□□□ -0.94
LIG4-202ENST00000405925 DRICH1Q6PGQ1 229 aaPredicted RBP9.19□□□□□ -0.94
LIG4-202ENST00000405925 C12orf76Q8N812 135 aaPredicted RBP9.19□□□□□ -0.94
LIG4-202ENST00000405925 CCDC124Q96CT7 223 aaKnown RBP9.19□□□□□ -0.94
LIG4-202ENST00000405925 CCDC126Q96EE4 140 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 MCOLN1Q9GZU1 580 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 SMG9Q9H0W8 520 aaKnown RBP9.19□□□□□ -0.94
LIG4-202ENST00000405925 NCKIPSDQ9NZQ3 722 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 PHTF1Q9UMS5 762 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 SYCE1LA8MT33 242 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 M0QZQ0 153 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 GJB5O95377 273 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 METTL18O95568 372 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 MT-CO1P00395 513 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 EPHX1P07099 455 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 OR56A5P0C7T3 313 aa9.19□□□□□ -0.94
LIG4-202ENST00000405925 IL10RBQ08334 325 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms