RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ZNF765Q7L2R6 523 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 LONP2Q86WA8 852 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 C1orf210Q8IVY1 113 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 MMGT1Q8N4V1 131 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 C1orf216Q8TAB5 229 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 ACTL9Q8TC94 416 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 COG1Q8WTW3 980 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 HTR3CQ8WXA8 447 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 FEM1CQ96JP0 617 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 TBATAQ96M53 351 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 DUSP15Q9H1R2 295 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-202ENST00000394943 SGK2Q9HBY8 427 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 MRM3Q9HC36 420 aaKnown RBP7.12□□□□□ -1.27
LIMA1-202ENST00000394943 PREBQ9HCU5 417 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 SAR1BQ9Y6B6 198 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 KRIT1O00522 736 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 SNAP91O60641 907 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 CCNB1P14635 433 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 NBL1P41271 181 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 DPP6P42658 865 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 PTPN5P54829 565 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 NRLP54845 237 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 CDK16Q00536 496 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 LMNB2Q03252 620 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 MPP3Q13368 585 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 AGBL4Q5VU57 503 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 AADACL2Q6P093 401 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 BRAT1Q6PJG6 821 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 ATPAF2Q8N5M1 289 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 RPLP0P6Q8NHW5 317 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 PIH1D2Q8WWB5 315 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 SCG3Q8WXD2 468 aaKnown RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 P3H4Q92791 437 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 RNF25Q96BH1 459 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 GDAP1L1Q96MZ0 367 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 FUT8Q9BYC5 575 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 PCDH9Q9HC56 1237 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 CACNA2D2Q9NY47 1150 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 TTC34A8MYJ7 566 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 ZNF217O75362 1048 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 MT-CO1P00395 513 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 HLA-DQB2P05538 268 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 ATXN1LP0C7T5 689 aaKnown RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 KRT10P13645 584 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 HOXD12P35452 270 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 DCDC1P59894 354 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 SNRPD1P62314 119 aaKnown RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 KDSRQ06136 332 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 NIPAL4Q0D2K0 466 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 SFSWAPQ12872 951 aaKnown RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 DHX34Q14147 1143 aaKnown RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 PARP6Q2NL67 630 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 TMEM259Q4ZIN3 620 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 TTC27Q6P3X3 843 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 NPNTQ6UXI9 565 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 DPPA4Q7L190 304 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 CYP2U1Q7Z449 544 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 RFX6Q8HWS3 928 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 RELL1Q8IUW5 271 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 MCUQ8NE86 351 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 GRIN3AQ8TCU5 1115 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 DNASE2BQ8WZ79 361 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 HAUS1Q96CS2 278 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 MRGPRX1Q96LB2 322 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 TDRD1Q9BXT4 1180 aaKnown RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 FOXQ1Q9C009 403 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 SEMA4AQ9H3S1 761 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 GLOD4Q9HC38 313 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 KCTD5Q9NXV2 234 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 IL36AQ9UHA7 158 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 DNAI1Q9UI46 699 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 MBD1Q9UIS9 605 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 CDC23Q9UJX2 597 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 HPCAL4Q9UM19 191 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 PACSIN2Q9UNF0 486 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 SYNJ2BP-COX16A0A087WUM0 186 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 AGAP14A8MT82 685 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 PDE2AO00408 941 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 INSIG1O15503 277 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 SIN3BO75182 1162 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 KLF8O95600 359 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 PDGFBP01127 241 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 PRNPP04156 253 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 PTMAP06454 111 aaKnown RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 TNFRSF8P28908 595 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 FDFT1P37268 417 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 COILP38432 576 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 GGCXP38435 758 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 RGRP47804 291 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 SLC10A7Q0GE19 358 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 BYSLQ13895 437 aaKnown RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 DLG2Q15700 870 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 ZNF805Q5CZA5 627 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 PPP6R3Q5H9R7 873 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 ZNF776Q68DI1 518 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-202ENST00000394943 DENND5AQ6IQ26 1287 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 KIAA1211LQ6NV74 962 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 RANBP10Q6VN20 620 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 TFAP2DQ7Z6R9 452 aa7.11□□□□□ -1.27
LIMA1-202ENST00000394943 KBTBD6Q86V97 674 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms